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...tactaaacaaaacttgtaatgttgtcgagtaggcatctcctccacagttctcatatttcatcagtattcagattaagattaactgcaaacatctttgtagGCAATTTTGGGCGGGACAGTTCAGGTTCCAACTCTCTCTGGAGATGTAGTTCTAAAG
species | Oryza sativa |
transcript | LOC_Os06g02620.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GAAGAGAGAAAGGTGATATTCATGTAGATGCTGTATTGAACGTGACTCAG GCAATTTTGGGCGGGACAGTTCAGGTTCCAACTCTCTCTGGAGATGTAGTTEST: gi|38477689|gb|CF961822.1|CF961822
genomic: GAAGAGAGAAAGGTGATATTCATGTAGATGCTGTATTGAACGTGACTCAGgtaagttgag ... atctttgtagGCAATTTTGGGCGGGACAGTTCAGGTTCCAACTCTCTCTGGAGATGTAGTT
EST: GAAGAGAGAAAGGTGATATTCATGTAGATGCTGTATTGAACGTGACTCAG GCAATTTTGGGCGGGACAGTTCAGGTTCCAACTCTCTCTGGAGATGTAGTTEST: gi|88832398|gb|CI019339.1|CI019339
genomic: GAAGAGAGAAAGGTGATATTCATGTAGATGCTGTATTGAACGTGACTCAGgtaagttgag ... atctttgtagGCAATTTTGGGCGGGACAGTTCAGGTTCCAACTCTCTCTGGAGATGTAGTT
EST: AAGAGAGAAA-GTNGATATTCATGTAGATGCTGTATTGAACGTGACTCAG GCAATTTTGGGCGGGACAGTTCAGGTTCCAACTCTCTCTGGAGATGTAGTTEST: gi|29614537|gb|CB619550.1|CB619550
genomic: AAGAGAGAAAGGT-GATATTCATGTAGATGCTGTATTGAACGTGACTCAGgtaagttgag ... atctttgtagGCAATTTTGGGCGGGACAGTTCAGGTTCCAACTCTCTCTGGAGATGTAGTT
EST: GAAGAGAGAAAGGTGATATTCATGTAGATGCTGTATTGAACGTGACTCAG GCAATTTTGGGCGGGACAGTTCAGGTTCCAACTCTCTCTGGAGATGTAGTTEST: gi|87018983|gb|CI256868.1|CI256868
genomic: GAAGAGAGAAAGGTGATATTCATGTAGATGCTGTATTGAACGTGACTCAGgtaagttgag ... atctttgtagGCAATTTTGGGCGGGACAGTTCAGGTTCCAACTCTCTCTGGAGATGTAGTT
EST: AAGAGAGAAAGGTGATATTCATGTAGATGCTGTATTTGAACGTGACTCAG GCAATTTTGGGCGGGACAGTTCAGGTTCCAACTCTCTCTGGAGATGTAGTTEST: gi|22304698|gb|BQ905920.1|BQ905920
genomic: AAGAGAGAAAGGTGATATTCATGTAGATGCTGTA-TTGAACGTGACTCAGgtaagttgag ... atctttgtagGCAATTTTGGGCGGGACAGTTCAGGTTCCAACTCTCTCTGGAGATGTAGTT
EST: AACGTGACTCAG GCCAATTTTGGGCGGGACAGTTCAGGGTTCCAACTCTCTCTGGAGATTGTA
genomic: AACGTGACTCAGgtaagttgag ... atctttgtagG-CAATTTTGGGCGGGACAGTTCA-GGTTCCAACTCTCTCTGGAGA-TGTA
agttctcatatttcatcagtattcagattaagattaactgcaaacatctttgtagGCAATTTTGGGCGGGACAGTTCAGGTTCCAACTCTCTCTGGAGATGTAGTTCTAAAG
gattaac putative branch site (score: 6)
catcttt putative PPT
attaagattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactaaacaaaacttgtaatgttgtcgagtaggcatctcctccacagttctcatatttcatcagtattcagattaagattaactgcaaacatctttgtagGCAATTTTGGGCGGGACAGTTCAGGTTCCAACTCTCTCTGGAGATGTAGTTCTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - aaacaaa
- - - - - - - - - atgttgt
- - - - - - - - - - - - - - - - - - - cctccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactgca