1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtattgtcattttgccacttaaaaaatttatttggtactatatttaatgttttgtatttcgctgcttgtctagtttcgttcaattaaatcttgattgtgttacctgatattatattccctttgtaacatattttactatcgatcatgaaacagGACAACATAACTAATGGTTCTCATTTATACTCTGTAATGAGTATGCTTTCGCTGGTCGGGCTTGTG
species | Oryza sativa |
transcript | LOC_Os05g50280.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTTTTTGTGAAG GACAACATAACTAATGGTTCTCATTTATACTCTGTAATGAGTATGCTTTCGEST: gi|29678789|gb|CB675064.1|CB675064
genomic: CAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTTTTTGTGAAGgtattgtcat ... catgaaacagGACAACATAACTAATGGTTCTCATTTATACTCTGTAATGAGTATGCTTTCG
EST: CAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTTTTTGTGAAG GACAACATAACTAATGGTTCTCATTTATACTCTGTAATGAGTATGCTTTCGEST: gi|29678790|gb|CB675065.1|CB675065
genomic: CAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTTTTTGTGAAGgtattgtcat ... catgaaacagGACAACATAACTAATGGTTCTCATTTATACTCTGTAATGAGTATGCTTTCG
EST: CAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTTTTTGTGAAG GACAACATAACTAATGGTTCTCATTTATACTCTGTAATGAGTATGCTTTCGEST: gi|7274036|gb|AU083580.1|AU083580
genomic: CAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTTTTTGTGAAGgtattgtcat ... catgaaacagGACAACATAACTAATGGTTCTCATTTATACTCTGTAATGAGTATGCTTTCG
EST: CATTACTCTTGTTGTTGTTTCTGTGTCATTTTTTGTGAAG GACAACATAACTAATGGTTCTCATTTATACTCTGTAATGAGTATGCTTTCGEST: gi|29674764|gb|CB671039.1|CB671039
genomic: CATTACTCTTGTTGTTGTTTCTGTGTCATTTTTTGTGAAGgtattgtcat ... catgaaacagGACAACATAACTAATGGTTCTCATTTATACTCTGTAATGAGTATGCTTTCG
EST: CAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTTTTTGTGAAG GACAACATAACTAATGGTTCTCATTTATACTCTGTAATGAGTATGCTTTCGEST: gi|701858|gb|D48149.1|D48149
genomic: CAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTTTTTGTGAAGgtattgtcat ... catgaaacagGACAACATAACTAATGGTTCTCATTTATACTCTGTAATGAGTATGCTTTCG
EST: CAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTTTTTGTGAAG GACAACATAACTAATGGTTCTCATTTATACTCTGTAATGAGTATGCTTTCGEST: gi|58679421|gb|CK068108.1|CK068108
genomic: CAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTTTTTGTGAAGgtattgtcat ... catgaaacagGACAACATAACTAATGGTTCTCATTTATACTCTGTAATGAGTATGCTTTCG
EST: CA-GGATGACCATTACTC-TGTTG-TGTTTCTGTGTCATTTTTTGTGAAG GACAACATAACTAATGGTTCTCATTTATACTCTGTAATGAGTATGCTTTCG
genomic: CAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTTTTTGTGAAGgtattgtcat ... catgaaacagGACAACATAACTAATGGTTCTCATTTATACTCTGTAATGAGTATGCTTTCG
gttacctgatattatattccctttgtaacatattttactatcgatcatgaaacagGACAACATAACTAATGGTTCTCATTTATACTCTGTAATGAGTATGCTTTCGCTGGTCGGGCTTGTG
ttgtaac putative branch site (score: 21)
tttgtaacatatttta TA-rich tract