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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttacagctttcttacactctttttcttgctattgagataagagcagcagagccatctaattctgttcttttatatatgcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACACAGAGCTGTTCGTGTATATTTGGATCAATTAATCACCACGAATATGAAT

Basic information

species Oryza sativa
transcript LOC_Os05g46720.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88998313|gb|CI038198.1|CI038198
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|86870320|gb|CI319426.1|CI319426
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|86430027|gb|CI082450.1|CI082450
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|58694963|gb|CK083650.1|CK083650
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|58587195|gb|CF985503.1|CF985503
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|29624626|gb|CB629637.1|CB629637
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|86835263|gb|CI346738.1|CI346738
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|86525963|gb|CI166169.1|CI166169
EST:     AGGACGATCTGCTTGCGTACATGGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|88469726|gb|CI406997.1|CI406997
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|86838843|gb|CI330283.1|CI330283
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|33659364|gb|CF281977.1|CF281977
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|86881627|gb|CI322623.1|CI322623
EST:     AGGACGAGCTGCTGGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATAC
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTG-CTTCTAGCAGCTCAACGACGAGTTAATTCTCCATAC
EST: gi|218484643|gb|FG956652.1|FG956652
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCT---AGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|25798655|gb|CA754616.1|CA754616
EST:     AGGACGAGCTGCTTGCGTACATTGACNAGCAAGATATGATCNAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|89189526|gb|CI049065.1|CI049065
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|38479555|gb|CF963658.1|CF963658
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCGAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCT---AGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|86889917|gb|CI319906.1|CI319906
EST:     AGGACGAGCTGCTTGCGTACATTGAC-AGCAAGATATGATCAAGTTTCGT                         -AAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|33659365|gb|CF281978.1|CF281978
EST:     AGGACGAGCTGCTTGCGTACATTGGCAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGGCGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|3768326|gb|AU032353.1|AU032353
EST:     GGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCCAGCTCAACGACGAGTTAATTCTCCATAC
genomic: GGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGAT-CAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAG-CAGCTCAACGACGAGTTAATTCTCCATAC
EST: gi|29640889|gb|CB645896.1|CB645896
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|86874766|gb|CI325277.1|CI325277
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|58688451|gb|CK077138.1|CK077138
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|88971451|gb|CI017765.1|CI017765
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|88842892|gb|CI371792.1|CI371792
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|29630848|gb|CB635857.1|CB635857
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|38479445|gb|CF963564.1|CF963564
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCT---AGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|88465558|gb|CI522309.1|CI522309
EST:     AGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|86539467|gb|CI179673.1|CI179673
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|15855575|gb|BI808387.1|BI808387
EST:     GGACGAGCTGCTTGCGTACATTGACACAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: GGACGAGCTGCTTGCGTACATTGACA-AGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|86866325|gb|CI336939.1|CI336939
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|88474988|gb|CI412259.1|CI412259
EST:     ACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: ACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|18387975|gb|BM421173.1|BM421173
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|15857007|gb|BI809819.1|BI809819
EST:     GACGAGCTGCTTGCGTACATTGACACAGCACAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: GACGAGCTGCTTGCGTACATTGACA-AGCA-AGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|86840926|gb|CI335092.1|CI335092
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCACCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|89178301|gb|CI391480.1|CI391480
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|88255213|gb|CI354037.1|CI354037
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTACCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|58692306|gb|CK080993.1|CK080993
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|29628430|gb|CB633441.1|CB633441
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|86897435|gb|CI294415.1|CI294415
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|86846260|gb|CI339851.1|CI339851
EST:     A-GACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|58691665|gb|CK080352.1|CK080352
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|86252637|gb|CI003973.1|CI003973
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|218503288|gb|FG958662.1|FG958662
EST:     GGACGAGCTGGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCT---AGCTCAACGACGAGTTAATTCTCCATACA
genomic: GGACGAGCT-GCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|29665230|gb|CB661505.1|CB661505
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|33657794|gb|CF280408.1|CF280408
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|86845777|gb|CI347055.1|CI347055
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|29631057|gb|CB636066.1|CB636066
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|29628212|gb|CB633223.1|CB633223
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|86896121|gb|CI330082.1|CI330082
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|29623353|gb|CB628364.1|CB628364
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|58590767|gb|CF989075.1|CF989075
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCT---AGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
EST: gi|88254093|gb|CI352719.1|CI352719
EST:     AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGT                         AAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA
genomic: AGGACGAGCTGCTTGCGTACATTGACAAGCAAGATATGATCAAGTTTCGTgtacgttaca ... gcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagataagagcagcagagccatctaattctgttcttttatatatgcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACACAGAGCTGTTCGTGTATATTTGGATCAATTAATCACCACGAATATGAAT
                     atctaat  putative branch site (score: 3)
                                            tgccttt  putative PPT
                        taattctgttctttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgttacagctttcttacactctttttcttgctattgagataagagcagcagagccatctaattctgttcttttatatatgcctttgcagAAAAAGAAATTCTGCTTCTAGCAGCTCAACGACGAGTTAATTCTCCATACACAGAGCTGTTCGTGTATATTTGGATCAATTAATCACCACGAATATGAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT