1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtattgagcactattattacctattggttccttatacaccatgtaccgtttttcatgatatgtttaacttgcttttatccttaaaacagAGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGCCCCATAAGGAGGGGCAACCTTCATCTCACTCCACCATTCCACCAGAACA
species | Oryza sativa |
transcript | LOC_Os05g43570.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GAAGAAGAAGAGTTCCAAGTCAAAGCGGCCAACTATCAAGACATTATTTG AGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGCEST: gi|88260620|gb|CI362913.1|CI362913
genomic: GAAGAAGAAGAGTTCCAAGTCAAAGCGGCCAACTATCAAGACATTATTTGgtattgagca ... cttaaaacagAGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGC
EST: TCAAGACATTATTTG AGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGCEST: gi|88273784|gb|CI394190.1|CI394190
genomic: TCAAGACATTATTTGgtattgagca ... cttaaaacagAGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGC
EST: TCAAGACATTATTTG AGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGCEST: gi|88264036|gb|CI367810.1|CI367810
genomic: TCAAGACATTATTTGgtattgagca ... cttaaaacagAGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGC
EST: AGACATTATTTG AGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGCEST: gi|325494464|gb|JG458988.1|JG458988
genomic: AGACATTATTTGgtattgagca ... cttaaaacagAGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGC
EST: GAAGAAGAAGAGTTCCAAGTCAAAGCGGCCAACTATCAAGACATTATTTG AGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGCEST: gi|86827108|gb|CI270824.1|CI270824
genomic: GAAGAAGAAGAGTTCCAAGTCAAAGCGGCCAACTATCAAGACATTATTTGgtattgagca ... cttaaaacagAGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGC
EST: GAAGAAGAAGAGTTCCAAGTCAAAGCGGCCAACTATCAAGACATTATTTG AGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGCEST: gi|86477542|gb|CI120175.1|CI120175
genomic: GAAGAAGAAGAGTTCCAAGTCAAAGCGGCCAACTATCAAGACATTATTTGgtattgagca ... cttaaaacagAGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGC
EST: GAAGAAGAAGAGTTCCAAGTCAAAGCGGCCAACTATCAAGACATTATTTG AGGGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGCEST: gi|88975445|gb|CI023696.1|CI023696
genomic: GAAGAAGAAGAGTTCCAAGTCAAAGCGGCCAACTATCAAGACATTATTTGgtattgagca ... cttaaaacagAGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGC
EST: GAGTTCCAAGTCAAAGCGGCCGACTATCAAGACATTATTTG AGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGCEST: gi|55408515|gb|CV720891.1|CV720891
genomic: GAGTTCCAAGTCAAAGCGGCCAACTATCAAGACATTATTTGgtattgagca ... cttaaaacagAGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGC
EST: GAAGAAGAAGAGTTCCAAGTCAAAGCGGCCAACTATCAAGACATTATTTG AGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGCEST: gi|88850051|gb|CI091346.1|CI091346
genomic: GAAGAAGAAGAGTTCCAAGTCAAAGCGGCCAACTATCAAGACATTATTTGgtattgagca ... cttaaaacagAGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGC
EST: GAAGAAGAAGAGTTCCAAGTCAAAGCGGCCAACTATCAAGACATTATTTG AGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGCEST: gi|86841681|gb|CI337375.1|CI337375
genomic: GAAGAAGAAGAGTTCCAAGTCAAAGCGGCCAACTATCAAGACATTATTTGgtattgagca ... cttaaaacagAGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGC
EST: GAAGAAGAAGAGTTCCAAGTCAAAGCGGCCAACTATCAAGACATTATTTG AGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGCEST: gi|29623780|gb|CB628791.1|CB628791
genomic: GAAGAAGAAGAGTTCCAAGTCAAAGCGGCCAACTATCAAGACATTATTTGgtattgagca ... cttaaaacagAGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGC
EST: GAAGAAGAAGAGTTCCAAGTCAAAGCGGCCAACTATCAAGACATTATTTG AGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGC
genomic: GAAGAAGAAGAGTTCCAAGTCAAAGCGGCCAACTATCAAGACATTATTTGgtattgagca ... cttaaaacagAGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGC
tacaccatgtaccgtttttcatgatatgtttaacttgcttttatccttaaaacagAGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGCCCCATAAGGAGGGGCAACCTTCATCTCACTCCACCATTCCACCAGAACA
gtttaac putative branch site (score: 5)
cttgcttttatcctt CT-rich tract
ttttatccttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgagcactattattacctattggttccttatacaccatgtaccgtttttcatgatatgtttaacttgcttttatccttaaaacagAGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGCCCCATAAGGAGGGGCAACCTTCATCTCACTCCACCATTCCACCAGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG