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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaacagtttctctttattcgcccgacagaacacccatgagtcatgcctcatttcatccttttcttttttgcatcgcatctgatctggtttgctgcatttttcatcccgcagAAACTTCATTGCGACAGAGAATGTCAGCCCTACAGGAACTGAATTTCAGGTTATTCAGCAATCTCAGCAAAATCAATTCTCCGGTTTCTGAGACCTCTTC

Basic information

species Oryza sativa
transcript LOC_Os05g37170.4
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87027559|gb|CI272324.1|CI272324
EST:     AATCGCCGTCTCCGTGCTCTCAGCTCCCTCTGGGCTTCACGTCCTCGCGA                         AAACTTCATTGCGACAGAGAATGTCAGCCCTACAGGAACTGAATTTCAGGT
genomic: AATCGCCGTCTCCGTGCTCTCAGCTCCCTCTGGGCTTCACGTCCTCGCGAgtaagtaaac ... catcccgcagAAACTTCATTGCGACAGAGAATGTCAGCCCTACAGGAACTGAATTTCAGGT
EST: gi|89163335|gb|CI100225.1|CI100225
EST:     AATCGCCGTCTCCGTGCTCTCAGCTCCCTCTGGGCTTCACGTCCTCGCGA                         AAACTTCATTGCGACAGAGAATGTCAGCTCTACAGGAACTGAATTTCAGGT
genomic: AATCGCCGTCTCCGTGCTCTCAGCTCCCTCTGGGCTTCACGTCCTCGCGAgtaagtaaac ... catcccgcagAAACTTCATTGCGACAGAGAATGTCAGCCCTACAGGAACTGAATTTCAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttttcttttttgcatcgcatctgatctggtttgctgcatttttcatcccgcagAAACTTCATTGCGACAGAGAATGTCAGCCCTACAGGAACTGAATTTCAGGTTATTCAGCAATCTCAGCAAAATCAATTCTCCGGTTTCTGAGACCTCTTC
                    atctgat  putative branch site (score: 4)
 tttttcatccc  putative PPT
 atttttcat  TA-rich tract