1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ttcagtgtgcacctttatgcttgttcatggaacaaataaaatgctaaccactttttttcgaacaaaaggacaaactcacttattgtggtttttgtttcagCTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTCTATCAATCAGGGTTTTCACATGCTCTCAAG
species | Oryza sativa |
transcript | LOC_Os05g28180.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCA CTCTGGAAGGTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTCEST: gi|27548799|gb|CA767547.2|CA767547
genomic: TTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCAgtactccctc ... tttgtttcagCTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTC
EST: TTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCA CTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTCEST: gi|29638453|gb|CB643462.1|CB643462
genomic: TTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCAgtactccctc ... tttgtttcagCTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTC
EST: TTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCA CTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTCEST: gi|29637475|gb|CB642484.1|CB642484
genomic: TTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCAgtactccctc ... tttgtttcagCTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTC
EST: TTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCA CTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTCEST: gi|87022773|gb|CI269709.1|CI269709
genomic: TTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCAgtactccctc ... tttgtttcagCTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTC
EST: AAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCA CTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTC
genomic: AAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCAgtactccctc ... tttgtttcagCTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTC
aaccactttttttcgaacaaaaggacaaactcacttattgtggtttttgtttcagCTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTCTATCAATCAGGGTTTTCACATGCTCTCAAG
tttttgtttc CT-rich tract
tttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcagtgtgcacctttatgcttgttcatggaacaaataaaatgctaaccactttttttcgaacaaaaggacaaactcacttattgtggtttttgtttcagCTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTCTATCAATCAGGGTTTTCACATGCTCTCAAG
- - - gtgcacc
- - - - - - - - atgcttg
- - - - - - - - - - - - - - -gaacaaa
- - - - - - - - - - - - - - - - - - - - atgctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggacaaa