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gtaaatgagacatcttcctttttatttatttttccaaccaagtgtttgcataactaaagtatgctcatttgatacgtttttgcatccaaacgattaacagGGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG
species | Oryza sativa |
transcript | LOC_Os05g01760.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTGATTCACAGTGGATTGTTCACCAAGTGGTTCCATCTCTCGGGAACCAG GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGEST: gi|86256753|gb|CI061516.1|CI061516
genomic: TTGATTCACAGTGGATTGTTCACCAAGTGGTTCCATCTCTCGGGAACCAGgtaaatgaga ... cgattaacagGGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG
EST: TTGATTCACAGTGGATTGTTCACCAAGTGGTTCCATCTCTCGGGAACCAG GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGEST: gi|89192299|gb|CI049760.1|CI049760
genomic: TTGATTCACAGTGGATTGTTCACCAAGTGGTTCCATCTCTCGGGAACCAGgtaaatgaga ... cgattaacagGGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG
EST: TTGATTCACAGTGGATTGTTCACCAAGTGGTTCCATCTCTCGGGAACCAG GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGEST: gi|88906135|gb|CI375207.1|CI375207
genomic: TTGATTCACAGTGGATTGTTCACCAAGTGGTTCCATCTCTCGGGAACCAGgtaaatgaga ... cgattaacagGGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG
EST: TGGATTGTTCACCAAGTGGTTCCATCTCTCGGGAACCAG GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGEST: gi|88247670|gb|CI247519.1|CI247519
genomic: TGGATTGTTCACCAAGTGGTTCCATCTCTCGGGAACCAGgtaaatgaga ... cgattaacagGGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG
EST: TTGATTCACAGTGGATTGTTCACCAAGTGGTTCCATCTCTCGGGAACCAG GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGEST: gi|86480070|gb|CI122703.1|CI122703
genomic: TTGATTCACAGTGGATTGTTCACCAAGTGGTTCCATCTCTCGGGAACCAGgtaaatgaga ... cgattaacagGGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG
EST: TTGATTCACAGTGGATTGTTCACCAAGTGGTTCCATCTCTCGGGAACCAG GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGEST: gi|88967069|gb|CI392031.1|CI392031
genomic: TTGATTCACAGTGGATTGTTCACCAAGTGGTTCCATCTCTCGGGAACCAGgtaaatgaga ... cgattaacagGGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG
EST: AGTGGTTCCATCTCTCGGGAACCAG GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGEST: gi|89191356|gb|CI393209.1|CI393209
genomic: AGTGGTTCCATCTCTCGGGAACCAGgtaaatgaga ... cgattaacagGGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG
EST: TTCCATCTCTCGGGAACCAG GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGEST: gi|29674708|gb|CB670983.1|CB670983
genomic: TTCCATCTCTCGGGAACCAGgtaaatgaga ... cgattaacagGGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG
EST: TTGATTCACAGTGGATTGTTCACCAAGTGGTTCCATCTCTCGGGAACCAG GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGEST: gi|88246448|gb|CI246297.1|CI246297
genomic: TTGATTCACAGTGGATTGTTCACCAAGTGGTTCCATCTCTCGGGAACCAGgtaaatgaga ... cgattaacagGGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG
EST: TTGATTCACAGTGGATTGTTCACCAAGTGGTTCCATCTCTCGGGAACCAG GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGEST: gi|86480080|gb|CI122713.1|CI122713
genomic: TTGATTCACAGTGGATTGTTCACCAAGTGGTTCCATCTCTCGGGAACCAGgtaaatgaga ... cgattaacagGGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG
EST: TTGATTCACAGTGGATTGTTCACCAAGTGGTTCCATCTCTCGGGAACCAG GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGGEST: gi|86479999|gb|CI122632.1|CI122632
genomic: TTGATTCACAGTGGATTGTTCACCAAGTGGTTCCATCTCTCGGGAACCAGgtaaatgaga ... cgattaacagGGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG
EST: TTGATTCACAGTGGATTGTTCACCAAGTGGTTCCATCTCTCGGGAACCAG GGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG
genomic: TTGATTCACAGTGGATTGTTCACCAAGTGGTTCCATCTCTCGGGAACCAGgtaaatgaga ... cgattaacagGGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG
ttgcataactaaagtatgctcatttgatacgtttttgcatccaaacgattaacagGGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG
taactaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgagacatcttcctttttatttatttttccaaccaagtgtttgcataactaaagtatgctcatttgatacgtttttgcatccaaacgattaacagGGCAAGTCAGAGAATGGAAGACCAGCATGGGAAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA