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...ttaaaaagtatttctgccctgtagagtactgccagttttcccctggcattttctaattgaaagtatgcataggattaattggacttgacatttgctgcagACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCGCTCGCATACGCCCGGATTCAAGGAAGGAGTGCTTTGATTGCTCATTTTC
species | Oryza sativa |
transcript | LOC_Os05g01240.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAG ACATTTAATGGCAAGAAATGGGAAAAATTCAATAGTGAAAAGGTGGCGTCGEST: gi|33381398|gb|CF196741.1|CF196741
genomic: ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAGgtatacatat ... tttgctgcagACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCG
EST: ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAG ACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCGEST: gi|29674666|gb|CB670941.1|CB670941
genomic: ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAGgtatacatat ... tttgctgcagACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCG
EST: ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAG ACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCGEST: gi|29674667|gb|CB670942.1|CB670942
genomic: ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAGgtatacatat ... tttgctgcagACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCG
EST: ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAG ACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCGEST: gi|218489237|gb|FG949713.1|FG949713
genomic: ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAGgtatacatat ... tttgctgcagACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCG
EST: ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAG ACATTTAATGGCAAGAAATGGGAGAAAT-CAATAGTGAAAAGGTGGCGTCGEST: gi|29678624|gb|CB674899.1|CB674899
genomic: ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAGgtatacatat ... tttgctgcagACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCG
EST: ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAG ACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCG
genomic: ATGCTTTTATCAATATGACTGATCCGCAGCACATAATCCCATTCTATAAGgtatacatat ... tttgctgcagACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCG
gcattttctaattgaaagtatgcataggattaattggacttgacatttgctgcagACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCGCTCGCATACGCCCGGATTCAAGGAAGGAGTGCTTTGATTGCTCATTTTC
taattgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaaaagtatttctgccctgtagagtactgccagttttcccctggcattttctaattgaaagtatgcataggattaattggacttgacatttgctgcagACATTTAATGGCAAGAAATGGGAGAAATTCAATAGTGAAAAGGTGGCGTCGCTCGCATACGCCCGGATTCAAGGAAGGAGTGCTTTGATTGCTCATTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG