1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtatgatgtcatcttccccagaagcttcaccttcacatatggcaatgcatcgatcaatctgatggttttgcaaagatcacacaaccttaccactgacaattccaaattaacatgtgacagTTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCACTGGGTAAAGAACTGTTTGAGAAAGAACAAGAAGACCTGCTCTCCGACCTGAATGAC
species | Oryza sativa |
transcript | LOC_Os04g57350.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TCGCTTGGGAAAGTTCTGAACACACCAGAAGTCATGCGTGTGTACATAGG TTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCACTGGGTAAEST: gi|25806656|gb|CA762617.1|CA762617
genomic: TCGCTTGGGAAAGTTCTGAACACACCAGAAGTCATGCGTGTGTACATAGGgtatgatgtc ... catgtgacagTTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCACTGGGTAA
EST: TCGC-TGGGAAAGTTCTGAACACACCAGAAGTCATGCGTGTGTACATAGG TTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCACTGGGTAAEST: gi|86477340|gb|CI119973.1|CI119973
genomic: TCGCTTGGGAAAGTTCTGAACACACCAGAAGTCATGCGTGTGTACATAGGgtatgatgtc ... catgtgacagTTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCACTGGGTAA
EST: TCGCTTGGGAAAGTTCTGAACACACCAGAAGTCATGCGTGTGTACATAGG TTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCACTGGGTAAEST: gi|87022084|gb|CI259156.1|CI259156
genomic: TCGCTTGGGAAAGTTCTGAACACACCAGAAGTCATGCGTGTGTACATAGGgtatgatgtc ... catgtgacagTTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCACTGGGTAA
EST: TCGCTTGGGAAAGTTCTGAACACACCAGAAGTCATGCGTGTGTACATAGG TTCATTTAACGATAAGCCCATTAGGGAGACAGTAGCTGGGCCACTGGGTAAEST: gi|66928201|gb|CX115049.1|CX115049
genomic: TCGCTTGGGAAAGTTCTGAACACACCAGAAGTCATGCGTGTGTACATAGGgtatgatgtc ... catgtgacagTTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCACTGGGTAA
EST: TCGCTTGGGAAAGTTCTGAACACACCAGAAGTCATGCGTGTGTACATAGG TTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCACTGGGTAA
genomic: TCGCTTGGGAAAGTTCTGAACACACCAGAAGTCATGCGTGTGTACATAGGgtatgatgtc ... catgtgacagTTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCACTGGGTAA
ttttgcaaagatcacacaaccttaccactgacaattccaaattaacatgtgacagTTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCACTGGGTAAAGAACTGTTTGAGAAAGAACAAGAAGACCTGCTCTCCGACCTGAATGAC
aattaac putative branch site (score: 101)
aaattaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatgtcatcttccccagaagcttcaccttcacatatggcaatgcatcgatcaatctgatggttttgcaaagatcacacaaccttaccactgacaattccaaattaacatgtgacagTTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCACTGGGTAAAGAACTGTTTGAGAAAGAACAAGAAGACCTGCTCTCCGACCTGAATGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG