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gttcaacttctcagtcgcctatgctcttataacattctagatgtcatgctgtgtctttttgttatgattttgagaaactcatcggtatacatatctgaaaattcagGTTTTGCGGGAGGAGGAATTTGCGCCTGTAAAGAATGCGAATGGCGCGTCTTATGATACCCCTGATAGCGCAAAGCTGATGCTGCTTCGTCTCCATAGTA
species | Oryza sativa |
transcript | LOC_Os04g52370.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGTATATATTCGACGCGTTCAGTTACTCCCCATCCACAGCACTTTTTGAG GTTTTGCGGGAGGAGGAATTTGCGCCTGTAAAGAATGCGAATGGCGCGTCTEST: gi|88961150|gb|CI096554.1|CI096554
genomic: AGTATATATTCGACGCGTTCAGTTACTCCCCATCCACAGCACTTTTTGAGgttcaacttc ... gaaaattcagGTTTTGCGGGAGGAGGAATTTGCGCCTGTAAAGAATGCGAATGGCGCGTCT
EST: AGTATATATTCGACGCGTTCAGTTACTCCCCATCCACAGCACTTTTTGAG GTTTTGCGGGAGGAGGAATTTGCGCCTGTAAAGAATGCGAATGGCGCGTCTEST: gi|86831371|gb|CI297640.1|CI297640
genomic: AGTATATATTCGACGCGTTCAGTTACTCCCCATCCACAGCACTTTTTGAGgttcaacttc ... gaaaattcagGTTTTGCGGGAGGAGGAATTTGCGCCTGTAAAGAATGCGAATGGCGCGTCT
EST: AGTATATATTCGACGCGTTCAGTTACTCCCCATCCACAGCACTTTTTGAG GTTTTGCGGGAGGAGGAATTTGCGCCTGTAAAGAATGCGAATGGCGCGTCT
genomic: AGTATATATTCGACGCGTTCAGTTACTCCCCATCCACAGCACTTTTTGAGgttcaacttc ... gaaaattcagGTTTTGCGGGAGGAGGAATTTGCGCCTGTAAAGAATGCGAATGGCGCGTCT
tgtctttttgttatgattttgagaaactcatcggtatacatatctgaaaattcagGTTTTGCGGGAGGAGGAATTTGCGCCTGTAAAGAATGCGAATGGCGCGTCTTATGATACCCCTGATAGCGCAAAGCTGATGCTGCTTCGTCTCCATAGTA
ttttgttatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcaacttctcagtcgcctatgctcttataacattctagatgtcatgctgtgtctttttgttatgattttgagaaactcatcggtatacatatctgaaaattcagGTTTTGCGGGAGGAGGAATTTGCGCCTGTAAAGAATGCGAATGGCGCGTCTTATGATACCCCTGATAGCGCAAAGCTGATGCTGCTTCGTCTCCATAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT