1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatgttttctgtgtattccggtcatctattggacctttatcaatttactcaaagacttgagatggattgcatcatgcttctctttctaatttgatgagtctgcttttagGTCATGGATGTTTTTATGAAGATATCACAAATCTTCCCTCAAATTAATGGCTAGTGGATCGTCGCCGTGAGATTGCAGTTTTGATTTTTGTTGCCCTATC
species | Oryza sativa |
transcript | LOC_Os04g35900.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TGCTCACAAAACCCGCTCAATATTGTAAAATACCAGAACGACAAAGAG GTCATGGATGTTTTTATGAAGATATCACAAATCTTCCCTCAAATTAATGGCEST: gi|89182174|gb|CI113543.1|CI113543
genomic: TGCTCACAAAACCCGCTCAATATTGTAAAATACCAGAACGACAAAGAGgtatgttttc ... ctgcttttagGTCATGGATGTTTTTATGAAGATATCACAAATCTTCCCTCAAATTAATGGC
EST: TGCTCACAAAACCCGCTCAATATTGTAAAATACCAGAACGACAAAGAG GTCATGGATGTTTTTATGAAGATATCACAAATCTTCCCTCAAATTAATGGCEST: gi|55410464|gb|CV722840.1|CV722840
genomic: TGCTCACAAAACCCGCTCAATATTGTAAAATACCAGAACGACAAAGAGgtatgttttc ... ctgcttttagGTCATGGATGTTTTTATGAAGATATCACAAATCTTCCCTCAAATTAATGGC
EST: AAAATACCAGAACGACAAAGAG GTCATGGATGTTTTTATGAAGATATCACAAATCTTCCCTCAAATTAATGGCEST: gi|29627184|gb|CB632195.1|CB632195
genomic: AAAATACCAGAACGACAAAGAGgtatgttttc ... ctgcttttagGTCATGGATGTTTTTATGAAGATATCACAAATCTTCCCTCAAATTAATGGC
EST: TGCTCACAAAACCCGCTCAATATTGTAAAATACCAGAACGACAAAGAG GTCATGGATGTTTTTATGAAGATATCACAAATCTTCCCTCAAATTAATGGCEST: gi|87010742|gb|CI312434.1|CI312434
genomic: TGCTCACAAAACCCGCTCAATATTGTAAAATACCAGAACGACAAAGAGgtatgttttc ... ctgcttttagGTCATGGATGTTTTTATGAAGATATCACAAATCTTCCCTCAAATTAATGGC
EST: TGCTCACAAAACCCGCTCAATATTGTAAAATACCAGAACGACAAAGAG GTCATGGATGTTTTTATGAAGATATCACAAATCTTCCCTCAAATTAATGGC
genomic: TGCTCACAAAACCCGCTCAATATTGTAAAATACCAGAACGACAAAGAGgtatgttttc ... ctgcttttagGTCATGGATGTTTTTATGAAGATATCACAAATCTTCCCTCAAATTAATGGC
acttgagatggattgcatcatgcttctctttctaatttgatgagtctgcttttagGTCATGGATGTTTTTATGAAGATATCACAAATCTTCCCTCAAATTAATGGCTAGTGGATCGTCGCCGTGAGATTGCAGTTTTGATTTTTGTTGCCCTATC
tctgctttt CT-rich tract
tttctaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttttctgtgtattccggtcatctattggacctttatcaatttactcaaagacttgagatggattgcatcatgcttctctttctaatttgatgagtctgcttttagGTCATGGATGTTTTTATGAAGATATCACAAATCTTCCCTCAAATTAATGGCTAGTGGATCGTCGCCGTGAGATTGCAGTTTTGATTTTTGTTGCCCTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA