1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tttttttaatttttaaacaaaagaatggataggttactattaatgatcagtgatatttatctatatcatgcatgcactaaaactgagatggtatttatagGTCTGTTGAGATCCAAGATTGATAGATTGAAGCAAGAAAGGAATATAACCCCCAAGCTTGTCTTTATCCATGGTGCACACGATGATACTACAGCATTCGA
species | Oryza sativa |
transcript | LOC_Os04g33690.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTACTCACCTACAGTCAGTAGCACAATCCCCTTCCCTCCTCCACGTGACT GTCTGTTGAGATCCAAGATTGATAGATTGAAGCAAGAAAGGAATATAACCCEST: gi|38480738|gb|CF964827.1|CF964827
genomic: TTACTCACCTACAGTCAGTAGCACAATCCCCTTCCCTCCTCCACGTGACTgtgagtcttc ... gtatttatagGTCTGTTGAGATCCAAGATTGATAGATTGAAGCAAGAAAGGAATATAACCC
EST: TTACTCACCTACAGTCAGTAGCACAATCCCCTTCCCTCCTCCACGTGACT GTCTGTTGAGATCCAAGATTGATAGATTGAAGCAAGAAAGGAATATAACCCEST: gi|58602368|gb|CK012896.1|CK012896
genomic: TTACTCACCTACAGTCAGTAGCACAATCCCCTTCCCTCCTCCACGTGACTgtgagtcttc ... gtatttatagGTCTGTTGAGATCCAAGATTGATAGATTGAAGCAAGAAAGGAATATAACCC
EST: CACAATCCCCTTCCCTCCTCCACGTGACT GTCTGTTGAGATCCAAGATTGATAGATTGAAGCAAGAAAGGAATATAACCCEST: gi|58597938|gb|CK008466.1|CK008466
genomic: CACAATCCCCTTCCCTCCTCCACGTGACTgtgagtcttc ... gtatttatagGTCTGTTGAGATCCAAGATTGATAGATTGAAGCAAGAAAGGAATATAACCC
EST: TTACTCACCTACAGTCAGTAGCACAATCCCCTTCCCTCCTCCACGTGACT GTCTGTTGAGATCCAAGATTGATAGATTGAAGCAAGAAAGGAATATAACCCEST: gi|86521916|gb|CI162122.1|CI162122
genomic: TTACTCACCTACAGTCAGTAGCACAATCCCCTTCCCTCCTCCACGTGACTgtgagtcttc ... gtatttatagGTCTGTTGAGATCCAAGATTGATAGATTGAAGCAAGAAAGGAATATAACCC
EST: CACCTACAGTCAGTAGCACAATCCCCTTCCCTCCTCCACGTGACT GTCTGTTGAGATCCAAGATTGATAGATTGAAGCAAGAAAGGAATATAACCC
genomic: CACCTACAGTCAGTAGCACAATCCCCTTCCCTCCTCCACGTGACTgtgagtcttc ... gtatttatagGTCTGTTGAGATCCAAGATTGATAGATTGAAGCAAGAAAGGAATATAACCC
atcagtgatatttatctatatcatgcatgcactaaaactgagatggtatttatagGTCTGTTGAGATCCAAGATTGATAGATTGAAGCAAGAAAGGAATATAACCCCCAAGCTTGTCTTTATCCATGGTGCACACGATGATACTACAGCATTCGA
cactaaa putative branch site (score: 11)
atatttatctatatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttttaatttttaaacaaaagaatggataggttactattaatgatcagtgatatttatctatatcatgcatgcactaaaactgagatggtatttatagGTCTGTTGAGATCCAAGATTGATAGATTGAAGCAAGAAAGGAATATAACCCCCAAGCTTGTCTTTATCCATGGTGCACACGATGATACTACAGCATTCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actaaaa