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gtaacgcttattctgctcgtaattctgtgtggtgtgaaattgtagaagaccaatgacctgaaccttacttttcctccttttgttccattctgcagCTTACTAATATCGCCAGCCTTTGGTTCATGTCACTATTTATCTGCATTTTTGCTACGGGCATTCTGGAAATGAGATGGAGTGGTGTAGGCATCGATGATT
species | Oryza sativa |
transcript | LOC_Os03g62090.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GTACATTGCCTGCCATCTGTTTGCTGACAGGAAAATTTATCACTCCAGAG CTTACTAATATCGCCAGCCTTTGGTTCATGTCACTATTTATCTGCATTTTTEST: gi|701559|gb|D47850.1|D47850
genomic: GTACATTGCCTGCCATCTGTTTGCTGACAGGAAAATTTATCACTCCAGAGgtaacgctta ... cattctgcagCTTACTAATATCGCCAGCCTTTGGTTCATGTCACTATTTATCTGCATTTTT
EST: GTACATNGCCTGCCATCTGTTTGCTGACAGGAAAATTTATCACTCCAGAG CTTACTAATATCGCCAGCCTTTGGGTCATGTCACTATTTATCTGCAATTTTEST: gi|38479364|gb|CF963491.1|CF963491
genomic: GTACATTGCCTGCCATCTGTTTGCTGACAGGAAAATTTATCACTCCAGAGgtaacgctta ... cattctgcagCTTACTAATATCGCCAGCCTTTGGTTCATGTCACTATTTATCTGCATTTTT
EST: GTACATTGCCTGCCATCTGTTTGCTGACAGGAAAATTTATCACTCCAGAG CTTACTAATATCGCCAGCCTTTGGTTCATGTCACTATTTATCTGCATTTTTEST: gi|58653971|gb|CK042651.1|CK042651
genomic: GTACATTGCCTGCCATCTGTTTGCTGACAGGAAAATTTATCACTCCAGAGgtaacgctta ... cattctgcagCTTACTAATATCGCCAGCCTTTGGTTCATGTCACTATTTATCTGCATTTTT
EST: GTACATTGCCTGCCATCTGTTTGCTGACAGGAAAATTTATCACTCCAGAG CTTACTAATATCGCCAGCCTTTGGTTCATGTCACTATTTATCTGCATTTTTEST: gi|163922993|gb|EG712766.1|EG712766
genomic: GTACATTGCCTGCCATCTGTTTGCTGACAGGAAAATTTATCACTCCAGAGgtaacgctta ... cattctgcagCTTACTAATATCGCCAGCCTTTGGTTCATGTCACTATTTATCTGCATTTTT
EST: GTACATTGCCTGCCATCTGTTTGCTGACAGGAAAATTTATCACTCCAGAG CTTACTAATATCGCCAGCCTTTGGTTCATGTCACTATTTATCTGCATTTTT
genomic: GTACATTGCCTGCCATCTGTTTGCTGACAGGAAAATTTATCACTCCAGAGgtaacgctta ... cattctgcagCTTACTAATATCGCCAGCCTTTGGTTCATGTCACTATTTATCTGCATTTTT
tgtagaagaccaatgacctgaaccttacttttcctccttttgttccattctgcagCTTACTAATATCGCCAGCCTTTGGTTCATGTCACTATTTATCTGCATTTTTGCTACGGGCATTCTGGAAATGAGATGGAGTGGTGTAGGCATCGATGATT
accttac putative branch site (score: 20)
ccttacttttcctcct CT-rich tract
ttactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgcttattctgctcgtaattctgtgtggtgtgaaattgtagaagaccaatgacctgaaccttacttttcctccttttgttccattctgcagCTTACTAATATCGCCAGCCTTTGGTTCATGTCACTATTTATCTGCATTTTTGCTACGGGCATTCTGGAAATGAGATGGAGTGGTGTAGGCATCGATGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA