1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtgctcatgtctcagctattctgtaaccagatccagtcgcattggtctatgaagaaatgtgatgttttttttttgtgcatggtacagGCACTTCGTGATCATTGGACAAGTATTCCAGCCAACTCAATACAGCTCCAGGAGCTAGGCCCTTTACTGAGGGATTATCAACGCCTCATTCTTCGCCGCT
species | Oryza sativa |
transcript | LOC_Os03g61950.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CCGGTGCCCAGCATGCATGCATTCAG GCCCTTCGTGATCATTGGCCAAGTATTCCAGCCAACTCAATACAGCTCCAGEST: gi|27547744|gb|CA767413.2|CA767413
genomic: CCGGTGACCAGCATGCATGCATTCAGgtgctcatgt ... catggtacagGCACTTCGTGATCATTGGACAAGTATTCCAGCCAACTCAATACAGCTCCAG
EST: TGCTTTTTGGTGAATCACCCCCTACCGGTGACCAGCATGCATGCATTCAG GCACTTCGTGATCATTGGACAAGTATTCCAGCCAACTCAATACAGCTCCAG
genomic: TGCTTTTTGGTGAATCACCCCCTACCGGTGACCAGCATGCATGCATTCAGgtgctcatgt ... catggtacagGCACTTCGTGATCATTGGACAAGTATTCCAGCCAACTCAATACAGCTCCAG
ccagtcgcattggtctatgaagaaatgtgatgttttttttttgtgcatggtacagGCACTTCGTGATCATTGGACAAGTATTCCAGCCAACTCAATACAGCTCCAGGAGCTAGGCCCTTTACTGAGGGATTATCAACGCCTCATTCTTCGCCGCT
ttttttttttgtgc CT-rich tract
tgatgtttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctcatgtctcagctattctgtaaccagatccagtcgcattggtctatgaagaaatgtgatgttttttttttgtgcatggtacagGCACTTCGTGATCATTGGACAAGTATTCCAGCCAACTCAATACAGCTCCAGGAGCTAGGCCCTTTACTGAGGGATTATCAACGCCTCATTCTTCGCCGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT