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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatatatagtaagagctgtactaagatgttacatgtatgtcgtgtaaattgtggtgtccctgtacaaaaagctcacacaatctcttggttacagTAAAGCTTCTGATGACTGCCGTGTATACAG

Basic information

species Oryza sativa
transcript LOC_Os03g56234.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86886329|gb|CI336032.1|CI336032
EST:     CAGCTGCGGACTTGCTGTTCTTTGCAGTCAAGAGGGACGCATTCTGCTGT                         TAAAGCTTCTGATGACTGCCGTGTATACAG
genomic: CAGCTGCGGACTTGCTGTTCTTTGCAGTCAAGAGGGACGCATTCTGCTGTgtaagatata ... ttggttacagTAAAGCTTCTGATGACTGCCGTGTATACAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtgtaaattgtggtgtccctgtacaaaaagctcacacaatctcttggttacagTAAAGCTTCTGATGACTGCCGTGTATACAG
                              agctcac  putative branch site (score: 3)
                                         tctctt  putative PPT
     taaattgt  TA-rich tract