1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaaaatctgcccctatgtggttttttttttaatttacttaaaatagatttgcaaaatctcaatatcagctccatgatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGTTGCTGATTTCTTCGATGCAGCAGTGAACTTGGCTTTGAAGGTTAAGGC
species | Oryza sativa |
transcript | LOC_Os03g52840.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|38474524|gb|CF958657.1|CF958657
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|88844991|gb|CI022345.1|CI022345
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29641600|gb|CB646607.1|CB646607
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|38479794|gb|CF963883.1|CF963883
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: ACAGTTCCTGGCTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATEST: gi|33380560|gb|CF195903.1|CF195903
genomic: ACAGTTCCTGG-TGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGAT
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29667992|gb|CB664267.1|CB664267
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|58692752|gb|CK081439.1|CK081439
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|89189479|gb|CI049018.1|CI049018
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: GGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29687054|gb|CB683329.1|CB683329
genomic: GGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29678031|gb|CB674306.1|CB674306
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29614139|gb|CB619152.1|CB619152
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29613559|gb|CB618572.1|CB618572
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29621133|gb|CB626144.1|CB626144
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|88226617|gb|CI226533.1|CI226533
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: GGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29672939|gb|CB669214.1|CB669214
genomic: GGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|4716856|gb|AU057972.1|AU057972
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|38474897|gb|CF959030.1|CF959030
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|88197090|gb|CI196940.1|CI196940
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: GTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29633900|gb|CB638909.1|CB638909
genomic: GTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29624607|gb|CB629618.1|CB629618
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29614629|gb|CB619642.1|CB619642
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|86415131|gb|CI069534.1|CI069534
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29670802|gb|CB667077.1|CB667077
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29618932|gb|CB623944.1|CB623944
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29622695|gb|CB627706.1|CB627706
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29638079|gb|CB643088.1|CB643088
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|11442748|gb|BF430651.1|BF430651
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29675548|gb|CB671823.1|CB671823
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|38476360|gb|CF960493.1|CF960493
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTCGTTGAGGAGGACTTTGCTAAGGEST: gi|29629705|gb|CB634714.1|CB634714
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCEST: gi|86903531|gb|CI323014.1|CI323014
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTC
EST: GAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATGTG-TGAGGAGGACTTTGCTAAGNEST: gi|88971400|gb|CI017714.1|CI017714
genomic: GAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29687894|gb|CB684169.1|CB684169
genomic: CAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29662689|gb|CB658964.1|CB658964
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29621679|gb|CB626690.1|CB626690
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29664044|gb|CB660319.1|CB660319
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|86491160|gb|CI133793.1|CI133793
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29646106|gb|CB651113.1|CB651113
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29681407|gb|CB677682.1|CB677682
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|33663440|gb|CF294407.1|CF294407
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|86428899|gb|CI075580.1|CI075580
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29646446|gb|CB651453.1|CB651453
genomic: CAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|38482519|gb|CF966548.1|CF966548
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29665919|gb|CB662194.1|CB662194
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29629706|gb|CB634715.1|CB634715
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29615275|gb|CB620287.1|CB620287
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29687453|gb|CB683728.1|CB683728
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29613482|gb|CB618495.1|CB618495
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|58692040|gb|CK080727.1|CK080727
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|86414951|gb|CI069354.1|CI069354
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: GGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|88985160|gb|CI006814.1|CI006814
genomic: GGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29630143|gb|CB635152.1|CB635152
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|55410185|gb|CV722561.1|CV722561
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|38472677|gb|CF956809.1|CF956809
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|86518438|gb|CI158644.1|CI158644
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|4714774|gb|AU055891.1|AU055891
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCNGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|38477716|gb|CF961849.1|CF961849
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATCTGTTGAGGAGGACTTTGCTAAGGEST: gi|88968917|gb|CI098974.1|CI098974
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|109974734|gb|DT807076.1|DT807076
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: AGGAGGCATTATGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|88980655|gb|CI022368.1|CI022368
genomic: AGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|86261552|gb|CI017294.1|CI017294
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|29674140|gb|CB670415.1|CB670415
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|38478928|gb|CF963061.1|CF963061
genomic: CACAGTTCCTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGG GAACCCCAGCACTGACCTCGAGAGGATTTGTTGAGGAGGACTTTGCTAAGGEST: gi|38474875|gb|CF959008.1|CF959008
genomic: CTGGTGATGTTTCAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGG
EST: CAGCTATGGTACCAGGAGGCATCAAGATGG GAACCCCAGCACTGACCTCAAGAGGATTTGTTAGAAGAGGACTTTGCTAAG
genomic: CAGCTATGGTACCAGGAGGCATCAGGATGGgtaaaatctg ... gatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTT-GAGGAGGACTTTGCTAAG
taatttacttaaaatagatttgcaaaatctcaatatcagctccatgatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGTTGCTGATTTCTTCGATGCAGCAGTGAACTTGGCTTTGAAGGTTAAGGC
ttttaat putative branch site (score: 3)
tacttaaaatagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatctgcccctatgtggttttttttttaatttacttaaaatagatttgcaaaatctcaatatcagctccatgatcatgcagGAACCCCAGCACTGACCTCAAGAGGATTTGTTGAGGAGGACTTTGCTAAGGTTGCTGATTTCTTCGATGCAGCAGTGAACTTGGCTTTGAAGGTTAAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG