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...ggatggagggagtacatcacttttacatgtttgtcttggttatcaatagttcaaaaaaatttattttactcatagtgtgtctcattattgtcctctgaagGAACTGCATAATAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAG
species | Oryza sativa |
transcript | LOC_Os03g52460.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TGGCTGAAGGAAAGGGGTCCTATTGGAATC-GGGAGAATACAAAGATTCA GAACTGCATAATAGACAATAATGCGAGGATAGGGAAGAAT-TAACAATTTCEST: gi|38481912|gb|CF965979.1|CF965979
genomic: TGGCTGAAGGAAA-GGTTCCTATTGGAATCGGGGAGAATACAAAGATTCAgtatgcatgc ... tcctctgaagGAACTGCATAATAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTC
EST: CTGGCTGAAGGAAAGGTTCCTATTGGAATCGGGGAGAATACAAAGATTCA GAACTGCATAATAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCEST: gi|15851940|gb|BI800216.1|BI800216
genomic: CTGGCTGAAGGAAAGGTTCCTATTGGAATCGGGGAGAATACAAAGATTCAgtatgcatgc ... tcctctgaagGAACTGCATAATAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTC
EST: CTGGCTGAAGGAAAGGTTCCTATTGGAATCGGGGAGAATACAAAGATTCA GAACTGCATAATAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCEST: gi|88849955|gb|CI001661.1|CI001661
genomic: CTGGCTGAAGGAAAGGTTCCTATTGGAATCGGGGAGAATACAAAGATTCAgtatgcatgc ... tcctctgaagGAACTGCATAATAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTC
EST: CTGGCTGAAGGAAAGGTTCCTATTGGAATCGGGGGGAATACAAAGATTCA GAACTGCATAATAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCEST: gi|66931523|gb|CX118371.1|CX118371
genomic: CTGGCTGAAGGAAAGGTTCCTATTGGAATCGGGGAGAATACAAAGATTCAgtatgcatgc ... tcctctgaagGAACTGCATAATAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTC
EST: CTGGCTGAAGGAAAGGTTCCTATTGGAATCGGGGAGAATACAAAGATTCA GAACTGCATAATAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCEST: gi|86870685|gb|CI323561.1|CI323561
genomic: CTGGCTGAAGGAAAGGTTCCTATTGGAATCGGGGAGAATACAAAGATTCAgtatgcatgc ... tcctctgaagGAACTGCATAATAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTC
EST: CTGGCTCAAGGAAAGGTTCCTATTGTAATCGGGGAGAATACAAAGATTCA GAACTGCATAATAAACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTC
genomic: CTGGCTGAAGGAAAGGTTCCTATTGGAATCGGGGAGAATACAAAGATTCAgtatgcatgc ... tcctctgaagGAACTGCATAATAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTC
atagttcaaaaaaatttattttactcatagtgtgtctcattattgtcctctgaagGAACTGCATAATAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAG
ttgtcctct CT-rich tract
tcaaaaaaatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatggagggagtacatcacttttacatgtttgtcttggttatcaatagttcaaaaaaatttattttactcatagtgtgtctcattattgtcctctgaagGAACTGCATAATAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - -gtacatc
- - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaa