1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...cgcaagtaggggacaaattgtatatttaatgcatgtttaacagcaaaacaaaaaaaaagtccatgtccccattgtatttacttggcttgtgttgctttagGTGCCAGCCCTTCAGAGATTCATTAGAAGCCGAGCTCACCTTCACCAACAAACGGGTGTTCAGATCACATCCTCAACCATCTATACATCAACATTACATA
species | Oryza sativa |
transcript | LOC_Os03g45770.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CCGCGGCGTTCATGCAACATCTAATTTTATATTTTTGGAACCGCTTCGAG GTGCCAGCCCTTCAGAGATTCATTAGAAGCCGAGCTCACCTTCACCAACAAEST: gi|2443167|gb|C74938.1|C74938
genomic: CCGCGGCGTTCATGCAACATCTAATTTTATATTTTTGGAACCGCTTCGAGgtatgctaat ... gttgctttagGTGCCAGCCCTTCAGAGATTCATTAGAAGCCGAGCTCACCTTCACCAACAA
EST: CCGCGGCGTTCATGCAACATCTAATTTTATATTTTTGGAACCGCTTCGAG GTGCCAGCCCTTCAGAGATTCATTAGAAGCCGAGCTCACCTTCACCAACAAEST: gi|218491801|gb|FG954125.1|FG954125
genomic: CCGCGGCGTTCATGCAACATCTAATTTTATATTTTTGGAACCGCTTCGAGgtatgctaat ... gttgctttagGTGCCAGCCCTTCAGAGATTCATTAGAAGCCGAGCTCACCTTCACCAACAA
EST: CCGCGGNGTTCATGCAACATCTAATTTTATATTTTTGGAACCGCTTCGAG GTGCCAGCCCTTCAGAGATTCATTAGAAGCCGAGCTCACCTTCACCAACAA
genomic: CCGCGGCGTTCATGCAACATCTAATTTTATATTTTTGGAACCGCTTCGAGgtatgctaat ... gttgctttagGTGCCAGCCCTTCAGAGATTCATTAGAAGCCGAGCTCACCTTCACCAACAA
aaacaaaaaaaaagtccatgtccccattgtatttacttggcttgtgttgctttagGTGCCAGCCCTTCAGAGATTCATTAGAAGCCGAGCTCACCTTCACCAACAAACGGGTGTTCAGATCACATCCTCAACCATCTATACATCAACATTACATA
ttgcttt CT-rich tract
aaaaaaaagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcaagtaggggacaaattgtatatttaatgcatgtttaacagcaaaacaaaaaaaaagtccatgtccccattgtatttacttggcttgtgttgctttagGTGCCAGCCCTTCAGAGATTCATTAGAAGCCGAGCTCACCTTCACCAACAAACGGGTGTTCAGATCACATCCTCAACCATCTATACATCAACATTACATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - ggacaaa
- - - - - - - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - aacagca
- - - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcttg