1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaaatttccacacttttttttcaattgttttcatctgccttgcctgcctttagaaacttccaatgagttataaactgtttgctctttctcctggcattttctgttgctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGGAGATTTCACAGAAAGTACAATACTTGGTTCCAACGGCACGTGGAGCCAC
species | Oryza sativa |
transcript | LOC_Os03g44900.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTTGCTTTTTACTATCAGCAA AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGGEST: gi|89195186|gb|CI051299.1|CI051299
genomic: TTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: GCGATTCATNATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGGEST: gi|89178711|gb|CI391709.1|CI391709
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGGEST: gi|86522596|gb|CI162802.1|CI162802
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: GCGATTCATGATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGGEST: gi|29630459|gb|CB635468.1|CB635468
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGGEST: gi|88663021|gb|CI477176.1|CI477176
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: TACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGGEST: gi|8527420|gb|AU092235.1|AU092235
genomic: TACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGGEST: gi|88268296|gb|CI378231.1|CI378231
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGGEST: gi|88469340|gb|CI406611.1|CI406611
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: TACTATCAGCCA AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGGEST: gi|88275469|gb|CI395320.1|CI395320
genomic: TACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGGEST: gi|88524842|gb|CI453795.1|CI453795
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: TGTTCTTTGCTTTTTACTATCAGCAA AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGGEST: gi|88663563|gb|CI483262.1|CI483262
genomic: TGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: ACTATCAGCAA AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGGEST: gi|33812923|gb|CF332349.1|CF332349
genomic: ACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGGEST: gi|29676310|gb|CB672585.1|CB672585
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGGEST: gi|4715388|gb|AU056505.1|AU056505
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: CGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCCAGCAA AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGEST: gi|29667066|gb|CB663341.1|CB663341
genomic: CGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTAT-CAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTG
EST: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGGEST: gi|218487618|gb|FG950215.1|FG950215
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
EST: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA AACACATACCAGCAATTTTTAAGTGCCAGAGAACTEST: gi|86840245|gb|CI342475.1|CI342475
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACT
EST: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAA AACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
genomic: GCGATTCATTATCTACGGATTTGTTGTTCTTTGCTTTCTACTATCAGCAAgtaaatttcc ... gctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGG
caatgagttataaactgtttgctctttctcctggcattttctgttgctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGGAGATTTCACAGAAAGTACAATACTTGGTTCCAACGGCACGTGGAGCCAC
ttttctgttgctttc CT-rich tract
agttataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttccacacttttttttcaattgttttcatctgccttgcctgcctttagaaacttccaatgagttataaactgtttgctctttctcctggcattttctgttgctttcatagAACACATACCAGCAATTTTTAAGTGCCAGAGAACTAAAGAAGCAATCGTGGAGATTTCACAGAAAGTACAATACTTGGTTCCAACGGCACGTGGAGCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG