1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaagatcattttagtagagttgttatgaacaaaatattctggcgtattgttctaacttctttgtcttctgttattttcagAAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTAGTATCAAATCCTGCCTTTTGGGAAAGAATGGGTGGCGATTCATTATCTA
species | Oryza sativa |
transcript | LOC_Os03g44900.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCG AAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTAEST: gi|8527420|gb|AU092235.1|AU092235
genomic: ATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCGgtaagatcat ... ttattttcagAAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTA
EST: ATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCG AAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTAEST: gi|33812921|gb|CF332348.1|CF332348
genomic: ATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCGgtaagatcat ... ttattttcagAAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTA
EST: ATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCG AAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTAEST: gi|33812923|gb|CF332349.1|CF332349
genomic: ATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCGgtaagatcat ... ttattttcagAAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTA
EST: ATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCG AAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTAEST: gi|29676310|gb|CB672585.1|CB672585
genomic: ATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCGgtaagatcat ... ttattttcagAAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTA
EST: ATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCG AAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTAEST: gi|4715388|gb|AU056505.1|AU056505
genomic: ATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCGgtaagatcat ... ttattttcagAAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTA
EST: TAGGCTTCCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCG AEST: gi|4715388|gb|AU056505.1|AU056505
genomic: TAGGCTT-CCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCGgtaagatcat ... ttattttcag-
EST: TAGGCTTCCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCG AEST: gi|29667066|gb|CB663341.1|CB663341
genomic: TAGGCTT-CCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCGgtaagatcat ... ttattttcag-
EST: ATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCG AAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTAEST: gi|218487618|gb|FG950215.1|FG950215
genomic: ATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCGgtaagatcat ... ttattttcagAAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTA
EST: ATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCG AAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTA
genomic: ATAGGCTTCCACAACCAAAGGACTCGGAGCGAGTCAAAAATTATATTCCGgtaagatcat ... ttattttcagAAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTA
tgaacaaaatattctggcgtattgttctaacttctttgtcttctgttattttcagAAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTAGTATCAAATCCTGCCTTTTGGGAAAGAATGGGTGGCGATTCATTATCTA
ttctaac putative branch site (score: 21)
cttctttgtcttctgt CT-rich tract
aaaatattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatcattttagtagagttgttatgaacaaaatattctggcgtattgttctaacttctttgtcttctgttattttcagAAGCACCCTGCAGTCACCCCTGCCAGCTTCCCGCAAATTCAGGCACCTGTAGTATCAAATCCTGCCTTTTGGGAAAGAATGGGTGGCGATTCATTATCTA
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