1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtatgatctctctattatacatgcctcaatatgctaatatgtatcctttacaaaattttctttaaacaactacataaaccctcatgcatctgtatcctgttacactgagttgctaatacctctatacctctgcttactttctttctaatactgttcgtgggcaccagtttgagtgatgttctatacctcttcttctacagTCACTGAGATTGCTAGGGGATGCCTCTGTGTCCTTTGAGAAAAACTGTGTCAGGGGAATTCAAGCAAACCATAAGAGAATTTCACAATTATTGCACGAG
species | Oryza sativa |
transcript | LOC_Os03g21950.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATTTTGAGTTGAATGTCTTTAAGCCAATGATTGCAGCTGGATTACTTAGA TCACTGAGATTGCTAGGGGATGCCTCTGTGTCCTTTGAGAAAAACTGTGTCEST: gi|33793415|gb|CF322587.1|CF322587
genomic: ATTTTGAGTTGAATGTCTTTAAGCCAATGATTGCAGCTGGATTACTTAGAgtatgatctc ... tcttctacagTCACTGAGATTGCTAGGGGATGCCTCTGTGTCCTTTGAGAAAAACTGTGTC
EST: TTAAGCCAATGATTGCAGCTGGATTACTTAGA TCACTGAGATTGCTAGGGGATGCCTCTGTGTCCTNTGAGAAAAACTGTGTCEST: gi|66913561|gb|CX100409.1|CX100409
genomic: TTAAGCCAATGATTGCAGCTGGATTACTTAGAgtatgatctc ... tcttctacagTCACTGAGATTGCTAGGGGATGCCTCTGTGTCCTTTGAGAAAAACTGTGTC
EST: ATTTTGAGTTGAATGTCTTTAAGCCAATGATTGCAGCTGGATTACTTAGA TCACTGAGATTGCTAGGGGATGCCTCTGTGTCCTTTGAGAAAAACTGTGTC
genomic: ATTTTGAGTTGAATGTCTTTAAGCCAATGATTGCAGCTGGATTACTTAGAgtatgatctc ... tcttctacagTCACTGAGATTGCTAGGGGATGCCTCTGTGTCCTTTGAGAAAAACTGTGTC
taatactgttcgtgggcaccagtttgagtgatgttctatacctcttcttctacagTCACTGAGATTGCTAGGGGATGCCTCTGTGTCCTTTGAGAAAAACTGTGTCAGGGGAATTCAAGCAAACCATAAGAGAATTTCACAATTATTGCACGAG
ttctaat putative branch site (score: 50)
ttctatacctcttctt putative PPT
ttctata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatctctctattatacatgcctcaatatgctaatatgtatcctttacaaaattttctttaaacaactacataaaccctcatgcatctgtatcctgttacactgagttgctaatacctctatacctctgcttactttctttctaatactgttcgtgggcaccagtttgagtgatgttctatacctcttcttctacagTCACTGAGATTGCTAGGGGATGCCTCTGTGTCCTTTGAGAAAAACTGTGTCAGGGGAATTCAAGCAAACCATAAGAGAATTTCACAATTATTGCACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA