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gtaaccagctgctgtctctacaatattacctccgtggttcgtgccactagaagttcctcttgttcttgtcaatgactgaaaattgtctttactcctgcagATCAAAAGTGCCCAATGGGCAACCTAAATGGCTATTGACAATAATCCCAAATTACCCAATGCTGAATTTCATGCTCACAACTGCTATATATGTTGCA
species | Oryza sativa |
transcript | LOC_Os03g19970.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GGAAAGATTACCTTAGAAACGTACATATCACAGTTCCATATTTGGCTCAG ATCAAAAGTGCCCAATGGGCAACCTAAATGGCTATTGACAATAATCCCAAAEST: gi|88845076|gb|CI084001.1|CI084001
genomic: GGAAAGATTACCTTAGAAACGTACATATCACAGTTCCATATTTGGCTCAGgtaaccagct ... actcctgcagATCAAAAGTGCCCAATGGGCAACCTAAATGGCTATTGACAATAATCCCAAA
EST: CGTACATATCACAGTTCCATATTTGGCTCAG ATCAAAAGTGCCCAATGGGCAACCTAAATGGCTATTGACAATAATCCCAAAEST: gi|38475137|gb|CF959270.1|CF959270
genomic: CGTACATATCACAGTTCCATATTTGGCTCAGgtaaccagct ... actcctgcagATCAAAAGTGCCCAATGGGCAACCTAAATGGCTATTGACAATAATCCCAAA
EST: GGAAAGATTACCTTAGAAACGTACATATCACAGTTCCATATTTGGCTCAG ATCAAAAGTGCCCAATGGGCAACCTAAATGGCTATTGACAATAATCCCAAAEST: gi|58594781|gb|CF993089.1|CF993089
genomic: GGAAAGATTACCTTAGAAACGTACATATCACAGTTCCATATTTGGCTCAGgtaaccagct ... actcctgcagATCAAAAGTGCCCAATGGGCAACCTAAATGGCTATTGACAATAATCCCAAA
EST: GGAAAGATTACCTTAGAAACGTACATATCACAGTTCCATATTTGGCTCAG ATCAAAAGTGCCCAATGGGCAACCTAAATGGCTATTGACAATAATCCCAAA
genomic: GGAAAGATTACCTTAGAAACGTACATATCACAGTTCCATATTTGGCTCAGgtaaccagct ... actcctgcagATCAAAAGTGCCCAATGGGCAACCTAAATGGCTATTGACAATAATCCCAAA
actagaagttcctcttgttcttgtcaatgactgaaaattgtctttactcctgcagATCAAAAGTGCCCAATGGGCAACCTAAATGGCTATTGACAATAATCCCAAATTACCCAATGCTGAATTTCATGCTCACAACTGCTATATATGTTGCA
ttgtctttactcct CT-rich tract
tgaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaccagctgctgtctctacaatattacctccgtggttcgtgccactagaagttcctcttgttcttgtcaatgactgaaaattgtctttactcctgcagATCAAAAGTGCCCAATGGGCAACCTAAATGGCTATTGACAATAATCCCAAATTACCCAATGCTGAATTTCATGCTCACAACTGCTATATATGTTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG