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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcctctggaattcaattgaacttgctttcgttttcttattttcttaacatgcgctggagactttaactcccgtctgctttggtgcagTTTGTTCAATCCTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACCTGTTAAAGGTAAACAAAACAAGTCCAACACAGAGTTATGGGTAGAGAAAT

Basic information

species Oryza sativa
transcript LOC_Os03g19690.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g19690.1 (Oryza sativa), 3'ss of exon 13
lower sequence: GRMZM2G135968_T01 (Zea mays), 3'ss of exon 13
gtcctctggaattcaattgaacttgctttcgttttcttattttcttaacatgcgctggagactttaactcccgtct--gctttggtgcagTTTGTTCAATCCTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACCTGTTAAAGGTAAACAAAACAAGTCCAACACAGAGTTATGGGTAGAGAAAT
    ||    || ||||| | | | ||||  ||  ||||||| || || |||| |  || | | ||||| |  |||  | | ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||  |||||||||||| ||| |||||||||||||||||||
---gtcctacatgcaattcagcctacttttattcacttatttcctcaa-atgcac-agaaagtataactactatctctggtctggtgcagTTTGTCCAATCTTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACTTGTGAAAGGTAATAAAAACAAGTCCACCACTGAGTTATGGGTAGAGAAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|427396|gb|D23461.1|D23461
EST:     TTTATGCTCAAGTTGATGCTGCTCTTCACAAAATAAGGGACACATCGGAG                         TTTGTTCAATCCTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACCT
genomic: TTTATGCTCAAGTTGATGCTGCTCTTCACAAAATAAGGGACACATCGGAGgtcctctgga ... tttggtgcagTTTGTTCAATCCTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACCT
EST: gi|86849660|gb|CI299794.1|CI299794
EST:     TTTATGCTCAAGTTGATGCTGCTCTTCACAAAATAAGGGACACATCGGAG                         TTTGTTCAATCCTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACCT
genomic: TTTATGCTCAAGTTGATGCTGCTCTTCACAAAATAAGGGACACATCGGAGgtcctctgga ... tttggtgcagTTTGTTCAATCCTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACCT
EST: gi|58658106|gb|CK046786.1|CK046786
EST:     TTTATGCTCAAGTTGATGCTGCTCTTCACAAAATAAGGGACACATCGGAG                         TTTGTTCAATCCTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACCT
genomic: TTTATGCTCAAGTTGATGCTGCTCTTCACAAAATAAGGGACACATCGGAGgtcctctgga ... tttggtgcagTTTGTTCAATCCTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACCT
EST: gi|29671022|gb|CB667297.1|CB667297
EST:     TTATGCTCAAGTTGATGCTGCTCTTCACAAAATAAGGGACACATCNGGAG                         TT-GTTCAATCCTTTGCATC
genomic: TTATGCTCAAGTTGATGCTGCTCTTCACAAAATAAGGGACACATC-GGAGgtcctctgga ... tttggtgcagTTTGTTCAATCCTTTGCATC
EST: gi|4881142|gb|AU065441.1|AU065441
EST:     TTTATGCTCAAGTTGATGCTGCTCTTCACAAAATAAGGGACACATCGGAG                         TTTGTTCAATCCTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACCT
genomic: TTTATGCTCAAGTTGATGCTGCTCTTCACAAAATAAGGGACACATCGGAGgtcctctgga ... tttggtgcagTTTGTTCAATCCTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttattttcttaacatgcgctggagactttaactcccgtctgctttggtgcagTTTGTTCAATCCTTTGCATCAGAGCATCTTAAGACGCCATTAGGAGAACCTGTTAAAGGTAAACAAAACAAGTCCAACACAGAGTTATGGGTAGAGAAAT
                                  ctcccgtctgcttt  CT-rich tract
     attttcttaa  TA-rich tract