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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tactgttgtgagatgaacagatattataacattaacttgaagtcttgtcattattttccaaagattgtaatctagcctcctacttttttttttcatccagATCAATGATATAAGTGGTTACTTGCCTGGCCGGATTGTTTTCTTCTTG

Basic information

species Oryza sativa
transcript LOC_Os03g18310.2
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g18310.3 (Oryza sativa), 3'ss of exon 13
lower sequence: GRMZM5G824405_T02 (Zea mays), 3'ss of exon 12
-tactgttg-tgagatgaacagatatta-taacattaacttgaagtcttgtcattattttccaaagattgtaatctagcctcctacttttttttttcatccagATCAATGATATAAGTGGTTACTTGCCTGGCCGGATTGTTTTCTTCTTG
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acaaaattgactttctgcatatattttagtgacat-accttgcagcctt-tgcttctagtggcatattcctaatctcataccctactttggtttt-cgtgcagATTAATGACATAAGTGGTTACTTGCCTGGACGGATCGTTTTCTTCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29643803|gb|CB648810.1|CB648810
EST:     CATATGTTAAGATCCTTTAAATGGTCAGTGGGACTGGGGGCCAATTGCAG                         ATCAATGATATAAGTGGTTACTTGCCTGGCCGGATTGTTTTCTTCTTG
genomic: CATATGTTAAGATGATTGATATGGTCAGTGGGACTGGGGGCCAATTGCAGgtatgtgtga ... tttcatccagATCAATGATATAAGTGGTTACTTGCCTGGCCGGATTGTTTTCTTCTTG
EST: gi|88431147|gb|CI574318.1|CI574318
EST:     GGTCAGTGGGACTGGGGGCCAATTGGAG                         ATCAATGATATAAGTGGTTACTTGCCTGGCCGGATTGTTTTCTTCTTG
genomic: GGTCAGTGGGACTGGGGGCCAATTGCAGgtatgtgtga ... tttcatccagATCAATGATATAAGTGGTTACTTGCCTGGCCGGATTGTTTTCTTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcattattttccaaagattgtaatctagcctcctacttttttttttcatccagATCAATGATATAAGTGGTTACTTGCCTGGCCGGATTGTTTTCTTCTTG
                         tctagcctcctacttt  CT-rich tract
                                   tacttttttttttcat  TA-rich tract