1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtactgaagatgttctccatctaaacttgtagagtacctctggatttgaactgctttgtgcttagtaatctgatcaaattgtgctcgaaattattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCACCAGCACCCGCAGTGGCACCGGCGGCAGCTTACCCTCAGCAACCTGTTG
species | Oryza sativa |
transcript | LOC_Os03g11200.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTCCTCAAGCAGCTGCTTACGGTGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|29628808|gb|CB633819.1|CB633819
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGTGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|89174096|gb|CI041989.1|CI041989
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|88462893|gb|CI519805.1|CI519805
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCAAGCAGGCTGCTTACGGCGCCTATCCTCCNACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|89184800|gb|CI048356.1|CI048356
genomic: CTCAAGCA-GCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCTACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|88471611|gb|CI408882.1|CI408882
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|86499191|gb|CI141824.1|CI141824
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|89176256|gb|CI043277.1|CI043277
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|86497082|gb|CI139715.1|CI139715
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|58671000|gb|CK059686.1|CK059686
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|87041196|gb|CI195818.1|CI195818
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|24468907|gb|CA305856.1|CA305856
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGTGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|88850543|gb|CI093224.1|CI093224
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACTTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|88487861|gb|CI425132.1|CI425132
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|86493516|gb|CI136149.1|CI136149
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|88200911|gb|CI198763.1|CI198763
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|86479247|gb|CI121880.1|CI121880
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|88555936|gb|CI486232.1|CI486232
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: TACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|86827107|gb|CI270823.1|CI270823
genomic: TACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|163917703|gb|EG711261.1|EG711261
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGTGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|29625008|gb|CB630019.1|CB630019
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGTGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|88543035|gb|CI470404.1|CI470404
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: TCCTCAAGCAGCTGGCTTACGGCGCCTATCCTCCAACATACCCCGTTCAG GCCTACACACAACAAACCTATGCACAACCTTCACCAATGGCGGTGGCGGCAEST: gi|88236165|gb|CI235367.1|CI235367
genomic: TCCTCAAGCAGCT-GCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|89175874|gb|CI042895.1|CI042895
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|89194661|gb|CI117098.1|CI117098
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|88222149|gb|CI222105.1|CI222105
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|88849567|gb|CI089475.1|CI089475
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACTAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|86480699|gb|CI123332.1|CI123332
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|88222399|gb|CI222355.1|CI222355
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACATACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|88508371|gb|CI435877.1|CI435877
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCAEST: gi|86482600|gb|CI125233.1|CI125233
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
EST: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAG GCCTACACACAACTAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
genomic: CTCCTCAAGCAGCTGCTTACGGCGCCTATCCTCCAACATACCCCGCTCAGgtactgaaga ... attattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCA
tttgaactgctttgtgcttagtaatctgatcaaattgtgctcgaaattattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCACCAGCACCCGCAGTGGCACCGGCGGCAGCTTACCCTCAGCAACCTGTTG
atctgat putative branch site (score: 2)
ttatttt putative PPT
tcgaaattatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgaagatgttctccatctaaacttgtagagtacctctggatttgaactgctttgtgcttagtaatctgatcaaattgtgctcgaaattattttagGCCTACACACAACAAACCTATGCACAACCTTCAGCAATGGCGGTGGCGGCACCAGCACCCGCAGTGGCACCGGCGGCAGCTTACCCTCAGCAACCTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT