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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacagatttatgatttcagagctcctagaaagctcatatcaccattcccccatgtgagctatgacttaagtaatcttctcgtgcagtctgctaacacaagggttggctggcatccagGCCATTGATGTCCCTGGTGTTGAAAAT

Basic information

species Oryza sativa
transcript LOC_Os03g02170.3
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02170.3 (Oryza sativa), 3'ss of exon 13
lower sequence: GRMZM2G092776_T03 (Zea mays), 3'ss of exon 15
gtaaacagattta---tgatttcagagctcctagaaagctcatatc---accattccccc-atgtgagctatgacttaagtaatcttctcgtgcagtctgctaacacaagggttggctggcatccagGCCATTGATGTCCCTGGTGTTGAAAAT
|| |||| | |     ||||||| ||  |  | || ||    |      ||  ||    | ||        ||||||   ||||  |||  || || ||||| || |||||  ||||||||||||||||||||||||| ||||||||||| || 
gtgaacaaagtgggattgatttc-gaattgattgatagtcagtgctggaacagttaagtcgatacctttgctgacttgc-taattctctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88227944|gb|CI227424.1|CI227424
EST:     AATGTGTACTCCACAGATGACTGGATTCTTGGTGTTACTTTTCGTGCGAG                         GCCATTGATGTCCCTGGTGTTGAAAAT
genomic: AATGTGTACTCCACAGATGACTGGATTCTTGGTGTTACTTTTCGTGCGAGgtaaacagat ... tggcatccagGCCATTGATGTCCCTGGTGTTGAAAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacttaagtaatcttctcgtgcagtctgctaacacaagggttggctggcatccagGCCATTGATGTCCCTGGTGTTGAAAAT
                          tgctaac  putative branch site (score: 1)
     aagtaat  TA-rich tract