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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacagatttatgatttcagagctcctagaaagctcatatcaccattcccccatgtgagctatgacttaagtaatcttctcgtgcagTCTGCTAACACAAGGGTTGGCTGGCATCCAGGCCATTGATGTCCCTGGTGTTGAAAATGTAAGCATCTGGGGTGCCATTCTTGTGTTCTTACGTGATTTT

Basic information

species Oryza sativa
transcript LOC_Os03g02170.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02170.1 (Oryza sativa), 3'ss of exon 13
lower sequence: GRMZM2G092776_T03 (Zea mays), 3'ss of exon 15
gtaaacagattta---tgatttcagagctcctagaaagctcatatc--accattcc--cccatgtgagctatgacttaagtaatcttctcgtgcagTCTGCTAACACAAGGGTTGGCTGGCATCCAGGCCATTGATGTCCCTGGTGTTGAAAATGTAAGCATCTGGGGTGCCATTCTTGTGTTCTTACGTGATTTT
|| |||| | |     ||||||| ||  |  | || ||    |     | || |     | ||        ||||||   ||||  |||  || || ||||| || |||||  ||||||||||||||||||||||||| ||||||||||| ||                                           
gtgaacaaagtgggattgatttc-gaattgattgatagtcagtgctggaacagttaagtcgatacctttgctgacttgc-taattctctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctcatatcaccattcccccatgtgagctatgacttaagtaatcttctcgtgcagTCTGCTAACACAAGGGTTGGCTGGCATCCAGGCCATTGATGTCCCTGGTGTTGAAAATGTAAGCATCTGGGGTGCCATTCTTGTGTTCTTACGTGATTTT
                                          tcttctcgt  CT-rich tract
                                  ttaagtaat  TA-rich tract