1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaagttctacaattctgttgccccagatggcgtacttaaaatctttagattattttattatatttgtttctttctacatctgcagTCACTGTGCTCATGGGACCCTTGCAAGAGACCAAAGGCTGCAGAAGTTCTCCAGCATACTTTCTTTCAG
species | Oryza sativa |
transcript | LOC_Os02g47220.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCA TCACTGTGCTCATGGGACCCTTTCAAGAGACCAAAGGCTGCAGAAGTTCTCEST: gi|58683626|gb|CK072313.1|CK072313
genomic: TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCAgtaagttcta ... acatctgcagTCACTGTGCTCATGGGACCCTTGCAAGAGACCAAAGGCTGCAGAAGTTCTC
EST: TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCA TCACTGTGCTCATGGGACCCTTTCAAGAGACCAAAGGCTGCAGAAGTTCTCEST: gi|88256807|gb|CI354588.1|CI354588
genomic: TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCAgtaagttcta ... acatctgcagTCACTGTGCTCATGGGACCCTTGCAAGAGACCAAAGGCTGCAGAAGTTCTC
EST: TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCA TCACTGTGCTCATGGGACCCTTGCAAGAGACEST: gi|88664333|gb|CI687436.1|CI687436
genomic: TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCAgtaagttcta ... acatctgcagTCACTGTGCTCATGGGACCCTTGCAAGAGAC
EST: TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCA TCACTGTGCTCATGGGACCCTTGCAAGAGACCAAAGGCTGCAGAAGTTCTCEST: gi|58675617|gb|CK064304.1|CK064304
genomic: TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCAgtaagttcta ... acatctgcagTCACTGTGCTCATGGGACCCTTGCAAGAGACCAAAGGCTGCAGAAGTTCTC
EST: TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCA TCACTGTGCTCATGGGACCCTTTCAAGAGACCAAAGGCTGCAGAAGTTCTCEST: gi|163918501|gb|EG711431.1|EG711431
genomic: TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCAgtaagttcta ... acatctgcagTCACTGTGCTCATGGGACCCTTGCAAGAGACCAAAGGCTGCAGAAGTTCTC
EST: TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCA TCACTGTGCTCATGGGACCCTTGCAAGAGACCAAAGGCTGCAGAAGTTCTC
genomic: TGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCAgtaagttcta ... acatctgcagTCACTGTGCTCATGGGACCCTTGCAAGAGACCAAAGGCTGCAGAAGTTCTC
cgtacttaaaatctttagattattttattatatttgtttctttctacatctgcagTCACTGTGCTCATGGGACCCTTGCAAGAGACCAAAGGCTGCAGAAGTTCTCCAGCATACTTTCTTTCAG
tttgtttctttctac CT-rich tract
ttaaaatctttagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttctacaattctgttgccccagatggcgtacttaaaatctttagattattttattatatttgtttctttctacatctgcagTCACTGTGCTCATGGGACCCTTGCAAGAGACCAAAGGCTGCAGAAGTTCTCCAGCATACTTTCTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT