1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtatgtacaacttctgtaaacccatttatctgaagatatgtcagaattgtctattcatctttgcctgaagagaactccaaaaaaacaagtgttgtctgaacaaagtgcatgaactgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTGTCATATGGGCTACGCTACCAAGACGTGAAGATCCCAGAAGCGTATGAAC
species | Oryza sativa |
transcript | LOC_Os02g38840.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATATGAAATTAACT GTCAAGAAACCCGGACTAGAAATGGCAACCGAACGAAGCGAGCTGGATCTGEST: gi|89176067|gb|CI043088.1|CI043088
genomic: ATATGAAATTAACTgtatgtacaa ... actgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
EST: AATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACT GTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTGEST: gi|89180521|gb|CI044800.1|CI044800
genomic: AATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACTgtatgtacaa ... actgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
EST: AATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACT GTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTGEST: gi|88262014|gb|CI365590.1|CI365590
genomic: AATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACTgtatgtacaa ... actgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
EST: CATGTATATGAAATTAACT GTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTGEST: gi|89192387|gb|CI049848.1|CI049848
genomic: CATGTATATGAAATTAACTgtatgtacaa ... actgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
EST: CCATCGGAAGCCATGTATATGAAATTAACT GTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTGEST: gi|29616737|gb|CB621749.1|CB621749
genomic: CCATCGGAAGCCATGTATATGAAATTAACTgtatgtacaa ... actgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
EST: AATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACT GTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTGEST: gi|88845594|gb|CI084519.1|CI084519
genomic: AATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACTgtatgtacaa ... actgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
EST: CAGCCATCGGAAGCCATGTATATGAAATTAACT GTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTGEST: gi|218492006|gb|FG967745.1|FG967745
genomic: CAGCCATCGGAAGCCATGTATATGAAATTAACTgtatgtacaa ... actgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
EST: AATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACT GTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTGEST: gi|89177186|gb|CI043689.1|CI043689
genomic: AATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACTgtatgtacaa ... actgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
EST: AATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACT GTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTGEST: gi|88242908|gb|CI240759.1|CI240759
genomic: AATTCGTTATACGGTTGCAGCCATCGGAAGCCATGTATATGAAATTAACTgtatgtacaa ... actgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
EST: TGAAATTAACT GTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
genomic: TGAAATTAACTgtatgtacaa ... actgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTG
aagagaactccaaaaaaacaagtgttgtctgaacaaagtgcatgaactgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTGTCATATGGGCTACGCTACCAAGACGTGAAGATCCCAGAAGCGTATGAAC
aaaaaaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtacaacttctgtaaacccatttatctgaagatatgtcagaattgtctattcatctttgcctgaagagaactccaaaaaaacaagtgttgtctgaacaaagtgcatgaactgttgcagGTCAAGAAACCCGGACTAGAAATGGCAACCGAACAAAGCGAGCTGGATCTGTCATATGGGCTACGCTACCAAGACGTGAAGATCCCAGAAGCGTATGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC