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...ggcaatagcttacgttctgcatgcggcttgtcaactttggacattgtacattatccaatttgaaataaatcaatattgtgccctcatcccttttttgcagACGTTCAATGGCAAGAAGTGGGAAAAGTTTAACAGTGAGAAAGTGGCATCACTTGCTTATGCTAGAATCCAAGGGAAATCAGCTCTTATTGCTCACTTCC
species | Oryza sativa |
transcript | LOC_Os02g31290.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATGCTTTCATCAATATGACCAATCCTCAGCATATCATTCCATTTTATCAG ACGTTCAATGGCAAGAAGTGGGAAAAGTTTAACAGTGAGAAAGTGGCATCAEST: gi|58691922|gb|CK080609.1|CK080609
genomic: ATGCTTTCATCAATATGACCAATCCTCAGCATATCATTCCATTTTATCAGgtgagagata ... ttttttgcagACGTTCAATGGCAAGAAGTGGGAAAAGTTTAACAGTGAGAAAGTGGCATCA
EST: ATGCTTTCATCAATATGACCAATCCTCAGCATATCATTCCATTTTATCAG ACGTTCAATGGCAAGAAGTGGGAAAAGTTTAACAGTGAGAAAGTGGCATCAEST: gi|58657140|gb|CK045820.1|CK045820
genomic: ATGCTTTCATCAATATGACCAATCCTCAGCATATCATTCCATTTTATCAGgtgagagata ... ttttttgcagACGTTCAATGGCAAGAAGTGGGAAAAGTTTAACAGTGAGAAAGTGGCATCA
EST: ATGCTTTCATCAATATGACCAATCCTCAGCATATCATTCCATTTTATCAG ACGTTCAATGGCAAGAAGTGGGAAAAGTTTAACAGTGAGAAAGTGGCATCAEST: gi|58696242|gb|CK084929.1|CK084929
genomic: ATGCTTTCATCAATATGACCAATCCTCAGCATATCATTCCATTTTATCAGgtgagagata ... ttttttgcagACGTTCAATGGCAAGAAGTGGGAAAAGTTTAACAGTGAGAAAGTGGCATCA
EST: ATGCTTTCATCAATATGACCAATCCTCAGCATATCATTCCATTTTATCAG ACGTTCAATGGCAAGAAGTGGGAAAAGTTTAACAGTGAGAAAGTGGCATCAEST: gi|56158059|gb|C72031.2|C72031
genomic: ATGCTTTCATCAATATGACCAATCCTCAGCATATCATTCCATTTTATCAGgtgagagata ... ttttttgcagACGTTCAATGGCAAGAAGTGGGAAAAGTTTAACAGTGAGAAAGTGGCATCA
EST: ATGCTTTCATCAATATGACCAATCCTCAGCATATCATTCCATTTTATCAG ACGTTCAATGGCAAGAAGTGGGAAAAGTTTACCAGTGAGAAAGTGGCATCAEST: gi|66930475|gb|CX117323.1|CX117323
genomic: ATGCTTTCATCAATATGACCAATCCTCAGCATATCATTCCATTTTATCAGgtgagagata ... ttttttgcagACGTTCAATGGCAAGAAGTGGGAAAAGTTTAACAGTGAGAAAGTGGCATCA
EST: ATGCTTTCATCAATATGACCAATCCTCAGCATATCATTCCATTTTATCAG ACGTTCAATGGCAAGAAGTGGGAAAAGTTTAACAGTGAGAAAGTGGCATCA
genomic: ATGCTTTCATCAATATGACCAATCCTCAGCATATCATTCCATTTTATCAGgtgagagata ... ttttttgcagACGTTCAATGGCAAGAAGTGGGAAAAGTTTAACAGTGAGAAAGTGGCATCA
gtacattatccaatttgaaataaatcaatattgtgccctcatcccttttttgcagACGTTCAATGGCAAGAAGTGGGAAAAGTTTAACAGTGAGAAAGTGGCATCACTTGCTTATGCTAGAATCCAAGGGAAATCAGCTCTTATTGCTCACTTCC
ttgtgccctcatccct CT-rich tract
ttatccaatttgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcaatagcttacgttctgcatgcggcttgtcaactttggacattgtacattatccaatttgaaataaatcaatattgtgccctcatcccttttttgcagACGTTCAATGGCAAGAAGTGGGAAAAGTTTAACAGTGAGAAAGTGGCATCACTTGCTTATGCTAGAATCCAAGGGAAATCAGCTCTTATTGCTCACTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - -tgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa