1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tatccaatgtatgccctttcaacaattgtcacatagctccccgcaaaaaaaaaaaaaaacaattgtcacatagctgactggatactgcatgcttgcatagGAGCTTTCTCGTGAGAGATTGTCGCTGGAGCTGGAGAGAGAGAAAGCAGCATCTCTGCAAGGGAAGCGGAAGCCCCAGAAGAGAGATGGCTCTGTTACAG
species | Oryza sativa |
transcript | LOC_Os02g28040.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GTCAACTTGTACATCAAGTAATTCACAGCAATGAAGAGCCAGCATTTGAG GAGCTTTCTCGTGAGAGATTGTCGCTGGAGCTGGAGAGAGAGAAAGCAGCAEST: gi|29674808|gb|CB671083.1|CB671083
genomic: GTCAACTTGTACATCAAGTAATTCACAGCAATGAAGAGCCAGCATTTGAGgtacttctct ... gcttgcatagGAGCTTTCTCGTGAGAGATTGTCGCTGGAGCTGGAGAGAGAGAAAGCAGCA
EST: GTCAACTTGTACATCAAGTAATTCACAGCAATGAAGAGCCAGCATTTGAG GAGCTTTCTCGTGAGAGATTGTCGCTGGAGCTGGAGAGAGAGAAAGCAGCAEST: gi|58607654|gb|CK035687.1|CK035687
genomic: GTCAACTTGTACATCAAGTAATTCACAGCAATGAAGAGCCAGCATTTGAGgtacttctct ... gcttgcatagGAGCTTTCTCGTGAGAGATTGTCGCTGGAGCTGGAGAGAGAGAAAGCAGCA
EST: GTCAACTTGTACATCAAGTAATTCACAGCAATGAAGAGCCAGCATTTGAG GAGCTTTCTCGTGAGAGATTGTCGCTGGAGCTGGAGAGAGAGAAAGCAGCAEST: gi|8856567|gb|AU093885.1|AU093885
genomic: GTCAACTTGTACATCAAGTAATTCACAGCAATGAAGAGCCAGCATTTGAGgtacttctct ... gcttgcatagGAGCTTTCTCGTGAGAGATTGTCGCTGGAGCTGGAGAGAGAGAAAGCAGCA
EST: GTCAACTTGTACATCAAGTAATTCACAGCAATGAAGAGCCAGCATTTGAG GAGCTTTCTCGTGAGAGATTGTCGCTGGAGCTGGAGAGAGAGAAAGCAGCA
genomic: GTCAACTTGTACATCAAGTAATTCACAGCAATGAAGAGCCAGCATTTGAGgtacttctct ... gcttgcatagGAGCTTTCTCGTGAGAGATTGTCGCTGGAGCTGGAGAGAGAGAAAGCAGCA
aaaaaaaaaaaaaacaattgtcacatagctgactggatactgcatgcttgcatagGAGCTTTCTCGTGAGAGATTGTCGCTGGAGCTGGAGAGAGAGAAAGCAGCATCTCTGCAAGGGAAGCGGAAGCCCCAGAAGAGAGATGGCTCTGTTACAG
agctgac putative branch site (score: 3)
aaaaaaaaacaattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatccaatgtatgccctttcaacaattgtcacatagctccccgcaaaaaaaaaaaaaaacaattgtcacatagctgactggatactgcatgcttgcatagGAGCTTTCTCGTGAGAGATTGTCGCTGGAGCTGGAGAGAGAGAAAGCAGCATCTCTGCAAGGGAAGCGGAAGCCCCAGAAGAGAGATGGCTCTGTTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - -tgtatgc
- - - - - - - - - -caacaat
- - - - - - - - - - - - - - - - - - - ccccgca
- - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgca