1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...attgtttccaagttctttgtttggcaattagattgatactatgactttaaaaacaattacaacaactgatcatcgtttggatatgatgttcttttggcagAAATCTGATCAGCAGAAATCAACAATGACAATGAGGGCCTACAACAACATACTAGCAATGGCGCAG
species | Oryza sativa |
transcript | LOC_Os02g20930.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTAACAAGGCAATATCTTCAGCAAAGACTGAAGAAGAGAAAACTAAAATT AAATCTGATCAGCAGAAATCAACAATGACAATGAGGGCCTACAACAACATAEST: gi|29640659|gb|CB645668.1|CB645668
genomic: TTAACAAGGCAATATCTTCAGCAAAGACTGAAGAAGAGAAAACTAAAATTgtgagttttt ... cttttggcagAAATCTGATCAGCAGAAATCAACAATGACAATGAGGGCCTACAACAACATA
EST: AGAAGAGAAAACTAAAATT AAATCTGATCAGCAGAAATCAACAATGACAATGAGGGCCTACAACAACATAEST: gi|58657534|gb|CK046214.1|CK046214
genomic: AGAAGAGAAAACTAAAATTgtgagttttt ... cttttggcagAAATCTGATCAGCAGAAATCAACAATGACAATGAGGGCCTACAACAACATA
EST: TTAACAAGGCAATATCTTCAGCAAAGACTGAAGAAGAGAAAACTAAAATT AAATCTGATCAGCAGAAATCAACAATGEST: gi|29615478|gb|CB620490.1|CB620490
genomic: TTAACAAGGCAATATCTTCAGCAAAGACTGAAGAAGAGAAAACTAAAATTgtgagttttt ... cttttggcagAAATCTGATCAGCAGAAATCAACAATG
EST: TTAACAAGGCAATATCTTCAGCAAAGACTGAAGAAGAGAAAACTAAAATT AAATCTGATCAGCAGAAATCAACAATGACAATGAGGGCCTACAACAACATA
genomic: TTAACAAGGCAATATCTTCAGCAAAGACTGAAGAAGAGAAAACTAAAATTgtgagttttt ... cttttggcagAAATCTGATCAGCAGAAATCAACAATGACAATGAGGGCCTACAACAACATA
tttaaaaacaattacaacaactgatcatcgtttggatatgatgttcttttggcagAAATCTGATCAGCAGAAATCAACAATGACAATGAGGGCCTACAACAACATACTAGCAATGGCGCAG
aactgat putative branch site (score: 51)
tgttctttt putative PPT
aaacaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtttccaagttctttgtttggcaattagattgatactatgactttaaaaacaattacaacaactgatcatcgtttggatatgatgttcttttggcagAAATCTGATCAGCAGAAATCAACAATGACAATGAGGGCCTACAACAACATACTAGCAATGGCGCAG
-ttgtttc
- - - - - - - - ttgtttg
- - - - - - - - - - - - - - - - -tgatact
- - - - - - - - - - - - - - - - - - - - - - - - -aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgatgt