Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacattgttttgtctattgacttgctgaaatttcgcgcacctgctctactgttggatattcgtttcatctcatatagtcttatcttcttcatcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCA

Basic information

species Oryza sativa
transcript LOC_Os02g17320.2
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g17320.1 (Oryza sativa), 3'ss of exon 13
lower sequence: GRMZM2G034143_T02 (Zea mays), 3'ss of exon 14
-----------------------------------------------------------------------------------------tacattgttttgtctattgac-ttgctgaaatttcgc-gcacctg----ctctactgttggatattcgtt-tcatctcatatagtcttatcttcttcatcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCA
                                                                                            |   |||||| |  | || ||    |||   | | ||||  |      |   | ||  |||||  || | |||||||  |||||    ||  || | ||  ||||||||||||| ||||| || || || || || ||||| ||||||||||| ||| |||||||||| || || |||||||| |||
gttcattttttattcctgttcactggacggcaccacctttcatgtcaattaaatcttataaaattttcaatctctcttccatgcacatgagtaccattttgtttgattacattagcaaaacagcactgcactagaagttacatttttttaatatttcttgttatctcattcagtctccattttatcctgat--cagGAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAGAAGCAAATATTATATTCCTTAATCTTATTTCA

upper sequence: LOC_Os02g17320.1 (Oryza sativa), 3'ss of exon 13
lower sequence: GRMZM2G034143_T03 (Zea mays), 3'ss of exon 14
tacattgttttgtc-tattgacttgctgaaatttcgcgcacctgctctactgttggatattcgtt-tcatctcatatagtcttatcttcttcatcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCA
 |  ||||||  |   |||  |        | | | |         |   | ||  |||||  || | |||||||  |||||    ||  || | ||  ||||||||||||| ||||| || || || || || ||||| ||||||||||| ||| |||||||||| || || |||||||| |||
cattttgtttgattacattagcaaaacagcactgcactagaagttacatttttttaatatttcttgttatctcattcagtctccattttatcctgat--cagGAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAGAAGCAAATATTATATTCCTTAATCTTATTTCA

upper sequence: LOC_Os02g17320.1 (Oryza sativa), 3'ss of exon 13
lower sequence: GRMZM2G169462_T01 (Zea mays), 3'ss of exon 12
tacattgttttgtctattgacttgctgaaatttcgcgcacctgctctactgttgg-atattcgtt-tcatctcatatagtcttatcttcttcatcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCA
|    |   ||   ||| |  |  || |      | | || |||  |||| ||   |||||  || | |||||||  | |||    ||  || | ||  ||||||| ||||| |||||||| || || || || || || ||||||||||||||| ||||||| || ||||| |||||||| |||
tgttataggttaagtatggtttgcctcattaagagggaacatgcattactatttttatatttcttgttatctcattcaatctccattttatcctgat--cagGAAACTCAGCAGTTCAAGCCATCTCCCTTCTATTAAAGAAGGGTGTACAGGAAGCAAATATCATATTTCTTAATCTTATTTCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29633369|gb|CB638378.1|CB638378
EST:     AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG                         GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: gi|87037876|gb|CI192498.1|CI192498
EST:     AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG                         GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: gi|3760815|gb|C98069.1|C98069
EST:     AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG                         GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: gi|87029276|gb|CI276544.1|CI276544
EST:     AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG                         GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: gi|88233330|gb|CI233179.1|CI233179
EST:     AGATATTGCAAACAGGCATGTGCTGTCGTTGGATCCCATACTGGGAACAG                         GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: gi|86498530|gb|CI141163.1|CI141163
EST:     AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG                         GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: gi|29675373|gb|CB671648.1|CB671648
EST:     AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG                         GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: gi|29627016|gb|CB632027.1|CB632027
EST:     AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG                         GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: gi|86537180|gb|CI177386.1|CI177386
EST:     AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG                         GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: gi|29669519|gb|CB665794.1|CB665794
EST:     AGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG                         GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
genomic: AGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: gi|29643326|gb|CB648333.1|CB648333
EST:     AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG                         GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: gi|86536638|gb|CI176844.1|CI176844
EST:     AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG                         GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
genomic: AGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
EST: gi|86486730|gb|CI129363.1|CI129363
EST:     GTTGGATCCCATACTGGGAACAG                         GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG
genomic: GTTGGATCCCATACTGGGAACAGgtatgttgat ... atcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctactgttggatattcgtttcatctcatatagtcttatcttcttcatcataccagGAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCA
                                tcttatcttcttcatc  CT-rich tract
                        tcatata  TA-rich tract