1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ctacaagacgtatttccgtcctaaaatacttccaaggtgttggttccattgtgcaattttttgttgtttcgacgcttatgtccaagttgtggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCTCCCAGGTACCCCCAGCCAAGCACCCCACCTTCCTATGGCTCTGTTGGG
species | Oryza sativa |
transcript | LOC_Os02g11820.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|88236936|gb|CI234787.1|CI234787
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|27548290|gb|CA766362.2|CA766362
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|86482102|gb|CI124735.1|CI124735
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|87037946|gb|CI192568.1|CI192568
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|86481113|gb|CI123746.1|CI123746
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: ACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|86437635|gb|CI119357.1|CI119357
genomic: ACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|87035950|gb|CI190572.1|CI190572
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTATCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|58674115|gb|CK062801.1|CK062801
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|87038360|gb|CI192982.1|CI192982
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|86478214|gb|CI120847.1|CI120847
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|3766575|gb|AU030685.1|AU030685
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCANTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|86477959|gb|CI120592.1|CI120592
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|88834377|gb|CI077660.1|CI077660
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|86513692|gb|CI156325.1|CI156325
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|86436986|gb|CI118708.1|CI118708
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCGAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|86855869|gb|CI271088.1|CI271088
genomic: CAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|86437244|gb|CI118966.1|CI118966
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|86482048|gb|CI124681.1|CI124681
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCTACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|86481992|gb|CI124625.1|CI124625
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|86436745|gb|CI118467.1|CI118467
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|29674781|gb|CB671056.1|CB671056
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|87023322|gb|CI272150.1|CI272150
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|87016249|gb|CI271660.1|CI271660
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|88966337|gb|CI119472.1|CI119472
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|86481741|gb|CI124374.1|CI124374
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: ATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|86478599|gb|CI121232.1|CI121232
genomic: ATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|86497710|gb|CI140343.1|CI140343
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|87038839|gb|CI193461.1|CI193461
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|86597722|gb|CI274713.1|CI274713
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|87016434|gb|CI273644.1|CI273644
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|86478037|gb|CI120670.1|CI120670
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|87031803|gb|CI272504.1|CI272504
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCEST: gi|87021407|gb|CI274014.1|CI274014
genomic: CATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
EST: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAAT GCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
genomic: CAGCAAGTTCCAAACATGTCTGAGCAGTTACCTAATACCATGCTTCCAATgtgagttgac ... ggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGC
ccattgtgcaattttttgttgtttcgacgcttatgtccaagttgtggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCTCCCAGGTACCCCCAGCCAAGCACCCCACCTTCCTATGGCTCTGTTGGG
aattttttgttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctacaagacgtatttccgtcctaaaatacttccaaggtgttggttccattgtgcaattttttgttgtttcgacgcttatgtccaagttgtggcattacagGCAACAAGGAGGTTTGGGTTCCCTCAACATGGGCTTTGATCAACAAGCTGCTCCCAGGTACCCCCAGCCAAGCACCCCACCTTCCTATGGCTCTGTTGGG
- - - - - - - - - - - - - - - - - -ggtgttg
- - - - - - - - - - - - - - - - - - - - - - - -attgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttatg