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...ttattttcttttgctggcaattgcctctctctctctctctctcatgactcatctatgggcactgacctcttcattccgtgctcatgatattcaattacagGTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAATGGTTTAGCTGGACCGTTGCACGGCCTGGCTAATCAG
species | Oryza sativa |
transcript | LOC_Os02g10070.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TGATCATGAAGGTGGAAACGTCAGTGCTCATACTGGACATCTG GTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAATEST: gi|218505577|gb|FG949556.1|FG949556
genomic: TGATCATGAAGGTGGAAACGTCAGTGCTCATACTGGACATCTGgtaatttttg ... tcaattacagGTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAAT
EST: TGATCATGAAGGTGGAAACGTCAGTGCTCATACTGGACATCTG GTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAATEST: gi|33794400|gb|CF323084.1|CF323084
genomic: TGATCATGAAGGTGGAAACGTCAGTGCTCATACTGGACATCTGgtaatttttg ... tcaattacagGTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAAT
EST: TGATCATGAAGGTGGAAACGTCAGTGCTCATACTGGACATCTG GTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAATEST: gi|14571277|gb|BI118645.1|BI118645
genomic: TGATCATGAAGGTGGAAACGTCAGTGCTCATACTGGACATCTGgtaatttttg ... tcaattacagGTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAAT
EST: TGATCATGAAGGTGGGAAACGTCAGTGCTCATACTGGACATCTG GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTTGCAGCTGCACTGAATEST: gi|58608873|gb|CK036906.1|CK036906
genomic: TGATCATGAAGGTGG-AAACGTCAGTGCTCATACTGGACATCTGgtaatttttg ... tcaattacagGTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAAT
EST: AGTGCTCATACTGGACATCTG GTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCGGTGAATEST: gi|87012999|gb|CI297226.1|CI297226
genomic: AGTGCTCATACTGGACATCTGgtaatttttg ... tcaattacagGTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAAT
EST: TGATCATGAAGGTGGAAACGTCAGTGCTCATACTGGACATCTG GTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAATEST: gi|58694362|gb|CK083049.1|CK083049
genomic: TGATCATGAAGGTGGAAACGTCAGTGCTCATACTGGACATCTGgtaatttttg ... tcaattacagGTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAAT
EST: TGATCATGAAGGTGGAAACGTCAGTGCTCATACTGGACATCTG GTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAATEST: gi|58668188|gb|CK056874.1|CK056874
genomic: TGATCATGAAGGTGGAAACGTCAGTGCTCATACTGGACATCTGgtaatttttg ... tcaattacagGTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAAT
EST: TGATCATGAAGGTGGAAACGTCAGTGCTCATACTGGACATCTG GTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAATEST: gi|38481573|gb|CF965662.1|CF965662
genomic: TGATCATGAAGGTGGAAACGTCAGTGCTCATACTGGACATCTGgtaatttttg ... tcaattacagGTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAAT
EST: TGATCATGAAGGTGGAAACGTCAGTGCTCATACTGGACATCTG GTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAAT
genomic: TGATCATGAAGGTGGAAACGTCAGTGCTCATACTGGACATCTGgtaatttttg ... tcaattacagGTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAAT
gactcatctatgggcactgacctcttcattccgtgctcatgatattcaattacagGTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAATGGTTTAGCTGGACCGTTGCACGGCCTGGCTAATCAG
cactgac putative branch site (score: 40)
atgatattcaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattttcttttgctggcaattgcctctctctctctctctctcatgactcatctatgggcactgacctcttcattccgtgctcatgatattcaattacagGTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAATGGTTTAGCTGGACCGTTGCACGGCCTGGCTAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - -tgctggc
- - - - - - - - - - -tgcctct
- - - - - - - - - - - - - - - - - - - - - catgact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgat