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gtttgtacctgtcacaatcagtttatgtatgctcacttgtgttttgtttgttgtggtaaatgctgtggtagtctaggcaccaggggaatggattaaggtaccatattcttggttgtatagcaactcaataattttgagcatacttattttgcagAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTGGAAAACGAAATTTTCGTATACGGAGAAAGCACCCTTTCCTGGTGATATA
species | Oryza sativa |
transcript | LOC_Os01g74460.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAG AGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTGEST: gi|88503388|gb|CI430894.1|CI430894
genomic: TAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAGgtttgtacct ... tattttgcagAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTG
EST: TACGCCGCTTTTAATCCACTGGCTGACAAG AGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTGEST: gi|86486002|gb|CI128635.1|CI128635
genomic: TACGCCGCTTTTAATCCACTGGCTGACAAGgtttgtacct ... tattttgcagAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTG
EST: TAACCCAGGATTTTGAGTTGTACGCCGCTCTTAATCCGCTGGCTGACAAG AGTCAAGCCATCAAGGTATNCAATAGAGTATGCCAATGGATCAGGGACCTGEST: gi|87029236|gb|CI276504.1|CI276504
genomic: TAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAGgtttgtacct ... tattttgcagAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTG
EST: TAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAG AGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTGEST: gi|88997559|gb|CI390225.1|CI390225
genomic: TAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAGgtttgtacct ... tattttgcagAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTG
EST: TAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAG AGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTGEST: gi|86861206|gb|CI326645.1|CI326645
genomic: TAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAGgtttgtacct ... tattttgcagAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTG
EST: TAACCCAGGATTTTGAGTTGTACCCCGCTTTTAATCCACTGGCTGACAAG AGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTG
genomic: TAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCCACTGGCTGACAAGgtttgtacct ... tattttgcagAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTG
accatattcttggttgtatagcaactcaataattttgagcatacttattttgcagAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTGGAAAACGAAATTTTCGTATACGGAGAAAGCACCCTTTCCTGGTGATATA
cttatttt CT-rich tract
aactcaataatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtacctgtcacaatcagtttatgtatgctcacttgtgttttgtttgttgtggtaaatgctgtggtagtctaggcaccaggggaatggattaaggtaccatattcttggttgtatagcaactcaataattttgagcatacttattttgcagAGTCAAGCAATCAAGGTATGCAATAGAGTATGCCAATGGATCAGGGACCTGGAAAACGAAATTTTCGTATACGGAGAAAGCACCCTTTCCTGGTGATATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA