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gtgaacagatcatttgctattccaaaactgctcttattattgtacttacgatcctgaccatcttgcttatgttaacttgtcgctccgagaattgacagATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCATACACACGGCTATTGCTGCACGGAAGCTGGATCGTTTTGGGCTGCAGACT
species | Oryza sativa |
transcript | LOC_Os01g72870.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTCTGTTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAG ATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCATEST: gi|88270636|gb|CI385894.1|CI385894
genomic: TTCTGTTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAGgtgaacagat ... gaattgacagATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCAT
EST: TTCTGTTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAG ATCTCAAAGCCTGCTCCTGGGGTTGCCTTGGTCTGTCGAAACTGAAGGCCAEST: gi|88524518|gb|CI450435.1|CI450435
genomic: TTCTGTTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAGgtgaacagat ... gaattgacagATCTCAAAGCGTGCTCCTGGGGTTGCCTTG-TCTGTCGAAACTGAAGGCCA
EST: TTCTGTTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAG ATCTCAAAGCGTTCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCATEST: gi|86537266|gb|CI177472.1|CI177472
genomic: TTCTGTTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAGgtgaacagat ... gaattgacagATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCAT
EST: TTCTGTTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAG ATCTCAAAGCGTGCTCCTGGGGTTCCCTTGTCTGTCGAAACTGAAGGCCATEST: gi|86535030|gb|CI175236.1|CI175236
genomic: TTCTGTTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAGgtgaacagat ... gaattgacagATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCAT
EST: TTCTGTTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAG ATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCATEST: gi|88526547|gb|CI454615.1|CI454615
genomic: TTCTGTTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAGgtgaacagat ... gaattgacagATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCAT
EST: TTCTGTTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAG ATCTCAAAGCGTGCTCCTGGGGTTTCCTTGTCTGTCGAAACTGAAGGCCATEST: gi|88975283|gb|CI023534.1|CI023534
genomic: TTCTGTTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAGgtgaacagat ... gaattgacagATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCAT
EST: TTCTGTTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAG ATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCAT
genomic: TTCTGTTTGATGTGGACGATCACTGGGGTCCGCTTGCACACTTGGAAGAGgtgaacagat ... gaattgacagATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCAT
acttacgatcctgaccatcttgcttatgttaacttgtcgctccgagaattgacagATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCATACACACGGCTATTGCTGCACGGAAGCTGGATCGTTTTGGGCTGCAGACT
ttatgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaacagatcatttgctattccaaaactgctcttattattgtacttacgatcctgaccatcttgcttatgttaacttgtcgctccgagaattgacagATCTCAAAGCGTGCTCCTGGGGTTGCCTTGTCTGTCGAAACTGAAGGCCATACACACGGCTATTGCTGCACGGAAGCTGGATCGTTTTGGGCTGCAGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG