1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaattctctttcagtttaagatagtagttcttttcccctcccctgccagccaaacggtgctcatctctgaccccatcttgcagAGCTTGAAGTTGCACTTGGATTACGCCGGTGTTGGTCGCCGGAAGAGAGGCGGTGGTGGCACTTCAGACTTCGAGTACGCTGGAAAGGATGCGTGGGCTT
species | Oryza sativa |
transcript | LOC_Os01g69900.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ACAGTGACCTTGTAGCTGCTGTGGACCATGCAAGGCAAATCGGTTGGAAG AGCTTGAAGTTGCACTTGGATTACGCCGGTGTTGGTCGCCGGAAGAGAGGCEST: gi|88502506|gb|CI430012.1|CI430012
genomic: ACAGTGACCTTGTAGCTGCTGTGGACCATGCAAGGCAAATCGGTTGGAAGgtaattctct ... catcttgcagAGCTTGAAGTTGCACTTGGATTACGCCGGTGTTGGTCGCCGGAAGAGAGGC
EST: TGCTGTGGACCATGCAAGGCAAATCGGTTGGAAG AGCTTGAAGTTGCACTTGGATTACGCCGGTGTTGGTCGCCGGAAGAGAGGCEST: gi|29626336|gb|CB631347.1|CB631347
genomic: TGCTGTGGACCATGCAAGGCAAATCGGTTGGAAGgtaattctct ... catcttgcagAGCTTGAAGTTGCACTTGGATTACGCCGGTGTTGGTCGCCGGAAGAGAGGC
EST: ACAGTGACCTTGTAGCTGCTGTGGACCATGCAAGGCAAATCGGTTGGAAG AGCTTGAAGTTGCACTTGGATTACGCCGGTGTTGGTCGCCGGAAGAGAGGCEST: gi|86837074|gb|CI347598.1|CI347598
genomic: ACAGTGACCTTGTAGCTGCTGTGGACCATGCAAGGCAAATCGGTTGGAAGgtaattctct ... catcttgcagAGCTTGAAGTTGCACTTGGATTACGCCGGTGTTGGTCGCCGGAAGAGAGGC
EST: ACAGTGACCTTGTAGCTGCTGTGGACCATGCAAGGCAAATCGGTTGGAAG AGCTTGAAGTTGCACTTGGATTACGCCGGTGTTGGTCGCCGGAAGAGAGGCEST: gi|29660359|gb|CB656634.1|CB656634
genomic: ACAGTGACCTTGTAGCTGCTGTGGACCATGCAAGGCAAATCGGTTGGAAGgtaattctct ... catcttgcagAGCTTGAAGTTGCACTTGGATTACGCCGGTGTTGGTCGCCGGAAGAGAGGC
EST: ACAGTGACCTTGTAGCTGCTGTGGACCATGCAAGGCAAATCGGTTGGAAG AGCTTGAAGTTGCCCTTGGATTACGCCGGTGTTGGTCCCCGGAAGAGAGGCEST: gi|86433216|gb|CI093559.1|CI093559
genomic: ACAGTGACCTTGTAGCTGCTGTGGACCATGCAAGGCAAATCGGTTGGAAGgtaattctct ... catcttgcagAGCTTGAAGTTGCACTTGGATTACGCCGGTGTTGGTCGCCGGAAGAGAGGC
EST: ACAGTGACCTTGTAGCTGCTGTGGACCATGCAAGGCAAATCGGTTGGAAG AGCTTGAAGTTGCACTTGGATTACGCCGGTGTTGGTCGCCGGAAGAGAGGCEST: gi|86839435|gb|CI339370.1|CI339370
genomic: ACAGTGACCTTGTAGCTGCTGTGGACCATGCAAGGCAAATCGGTTGGAAGgtaattctct ... catcttgcagAGCTTGAAGTTGCACTTGGATTACGCCGGTGTTGGTCGCCGGAAGAGAGGC
EST: ACAGTGACCTTGTAGCTGCTGTGGACCATGCAAGGCAAATCGGTTGGAAG AGCTTGAAGTTGCACTTGGATTACGCCGGTGTTGGTCGCCGGAAGAGAGGCEST: gi|29668009|gb|CB664284.1|CB664284
genomic: ACAGTGACCTTGTAGCTGCTGTGGACCATGCAAGGCAAATCGGTTGGAAGgtaattctct ... catcttgcagAGCTTGAAGTTGCACTTGGATTACGCCGGTGTTGGTCGCCGGAAGAGAGGC
EST: ACAGTGACCTTGTAGCTGCTGTGGACCATGCAAGGCAAATCGGTTGGAAG AGCTTGAAGTTGCACTTGGATTACGCCGGTGTTGGTCGCCGGAAGAGAGGC
genomic: ACAGTGACCTTGTAGCTGCTGTGGACCATGCAAGGCAAATCGGTTGGAAGgtaattctct ... catcttgcagAGCTTGAAGTTGCACTTGGATTACGCCGGTGTTGGTCGCCGGAAGAGAGGC
tcttttcccctcccctgccagccaaacggtgctcatctctgaccccatcttgcagAGCTTGAAGTTGCACTTGGATTACGCCGGTGTTGGTCGCCGGAAGAGAGGCGGTGGTGGCACTTCAGACTTCGAGTACGCTGGAAAGGATGCGTGGGCTT
ctctgac putative branch site (score: 13)
ccccatctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattctctttcagtttaagatagtagttcttttcccctcccctgccagccaaacggtgctcatctctgaccccatcttgcagAGCTTGAAGTTGCACTTGGATTACGCCGGTGTTGGTCGCCGGAAGAGAGGCGGTGGTGGCACTTCAGACTTCGAGTACGCTGGAAAGGATGCGTGGGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG