1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ctgcgattttggtttagcacaacaaggttgctactgtatggaagtgcataaactgtgatcgaacatcctattgagtttaacttgccactttttggtacagATTTGGCAAGTGGAATACATGCAAACCAGTTTTCAGATGAGGAATCTGAAAAGATATCCACTTTCCTTAAAAGGGCTTATGTAAGGCTGAACTCTTGGTT
species | Oryza sativa |
transcript | LOC_Os01g69210.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GCAGTACCCTTCCAATGGAAATCCCCCAACCTTATTTCTTGCACTGCGTG ATTTGGCAAGTGGAATACATGCAAACCAGTTTTCAGATGAGGAATCTGAAAEST: gi|29631403|gb|CB636412.1|CB636412
genomic: GCAGTACCCTTCCAATGGAAATCCCCCAACCTTATTTCTTGCACTGCGTGgtgagacaat ... tttggtacagATTTGGCAAGTGGAATACATGCAAACCAGTTTTCAGATGAGGAATCTGAAA
EST: GCAGTACCCTTCCAATGGAAATCCCCCAACCTTATTTCTTGCACTGCGTG ATTTGGCAAGTGGAATACATGCAAACCAGTTTTCAGATGAGGAATCTGAAA
genomic: GCAGTACCCTTCCAATGGAAATCCCCCAACCTTATTTCTTGCACTGCGTGgtgagacaat ... tttggtacagATTTGGCAAGTGGAATACATGCAAACCAGTTTTCAGATGAGGAATCTGAAA
gcataaactgtgatcgaacatcctattgagtttaacttgccactttttggtacagATTTGGCAAGTGGAATACATGCAAACCAGTTTTCAGATGAGGAATCTGAAAAGATATCCACTTTCCTTAAAAGGGCTTATGTAAGGCTGAACTCTTGGTT
gtttaac putative branch site (score: 11)
ccacttttt putative PPT
tttaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgcgattttggtttagcacaacaaggttgctactgtatggaagtgcataaactgtgatcgaacatcctattgagtttaacttgccactttttggtacagATTTGGCAAGTGGAATACATGCAAACCAGTTTTCAGATGAGGAATCTGAAAAGATATCCACTTTCCTTAAAAGGGCTTATGTAAGGCTGAACTCTTGGTT
- - - - - - - - - -caacaag
- - - - - - - - - - - - - - tgctact
- - - - - - - - - - - - - - - - - - - - - -gtgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acttgcc