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...aaactaaactaaattggatatttgctaattgcctatttaaaattaacttatatgagcttgttaatgcaattaatgttgcaactgttgttatcctttgtagGCTGAATTAGGAGGACAAATTCTTGGGAGGGGCATTGATTTGAACAAAGATTTTGCGAAGCTTCAG
species | Oryza sativa |
transcript | LOC_Os01g63820.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTAAATGGAGAATACCATTTCCAG GCTGAATTAGGAGGACAAATTCTTGGGAGGGGCATTGATTTGAACAAAGATEST: gi|58687063|gb|CK075750.1|CK075750
genomic: TTAAATGGAGAATACCATTTCCAGgttaattaac ... tcctttgtagGCTGAATTAGGAGGACAAATTCTTGGGAGGGGCATTGATTTGAACAAAGAT
EST: ATCAAGTACGGGATTCTGGCTCAGCATTAAATGGAGAATACCATTTCCAG GCTGAATTAGGAGGACAAATTCTTGGGAGGGGCATTGGTTTGAACAAAGAT
genomic: ATCAAGTACGGGATTCTGGCTCAGCATTAAATGGAGAATACCATTTCCAGgttaattaac ... tcctttgtagGCTGAATTAGGAGGACAAATTCTTGGGAGGGGCATTGATTTGAACAAAGAT
acttatatgagcttgttaatgcaattaatgttgcaactgttgttatcctttgtagGCTGAATTAGGAGGACAAATTCTTGGGAGGGGCATTGATTTGAACAAAGATTTTGCGAAGCTTCAG
ttatccttt CT-rich tract
ttaatgcaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaactaaactaaattggatatttgctaattgcctatttaaaattaacttatatgagcttgttaatgcaattaatgttgcaactgttgttatcctttgtagGCTGAATTAGGAGGACAAATTCTTGGGAGGGGCATTGATTTGAACAAAGATTTTGCGAAGCTTCAG
aaactaa
- - - - - - - - - - - tgctaat
- - - - - - - - - - - - - - - - - - - - - - - - - - -gagcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttgt