1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...atagctaaattgaatttgttggtattgttagcttattgatctggtatatatttctcacaagtggatgaattatcattaaccttgcttacgttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGTGCTTTTGGCACCTATGACTATGCTCCCCTCTTGGATTCTCTTGAAGGAA
species | Oryza sativa |
transcript | LOC_Os01g63270.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG TTCAAACCAGACCCACGTTTTEST: gi|27578213|gb|CB000908.1|CB000908
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTT
EST: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
genomic: CCAAGGCAGATCAAGTTGCTGGGCTGAGGAAGGATAGAGAGAATGGCTTGgtaagatatt ... ttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGT
atatatttctcacaagtggatgaattatcattaaccttgcttacgttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGTGCTTTTGGCACCTATGACTATGCTCCCCTCTTGGATTCTCTTGAAGGAA
tgcttac putative branch site (score: 19)
atgaattatcattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagctaaattgaatttgttggtattgttagcttattgatctggtatatatttctcacaagtggatgaattatcattaaccttgcttacgttaccaacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGCTTATAAGGAGTGGTGCTTTTGGCACCTATGACTATGCTCCCCTCTTGGATTCTCTTGAAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- agctaaa
- - - - - - - tttgttg
- - - - - - - - - - - - - - - - - - tgatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttac