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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgatattttgaatggtgtttttaatggaaaatattctacagtatcaaaaaaaaagtcagcaatccagtggttccatttccagtatatctcttatctgacattcatacaatgtatgcagGAGACTGGCCGAATTTCTGTCAGTGATTATGTGAGAGTGACAAGCACAGAATG

Basic information

species Oryza sativa
transcript LOC_Os01g59340.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87026885|gb|CI259538.1|CI259538
EST:     GTATCGAGGAAAGGATGCATATTATTTGGGACAGTATGGTG                         GAGACTGGCCGAATTTCTGTCAGTGATTATGTGAGAGTGACAAGCACAGAA
genomic: GTATCGAGGAAAGGATGCATATTATTTGGGACAGTATGGTGgtaagttgat ... atgtatgcagGAGACTGGCCGAATTTCTGTCAGTGATTATGTGAGAGTGACAAGCACAGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccagtggttccatttccagtatatctcttatctgacattcatacaatgtatgcagGAGACTGGCCGAATTTCTGTCAGTGATTATGTGAGAGTGACAAGCACAGAATG
                             atctgac  putative branch site (score: 3)
                 agtatat  TA-rich tract