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...aagattatttctacttacaataatactagttgcagtggagattcttctgaagcgtagttaggaattacaggtactaacttttgtgtgctgtataatgcagTTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTGATCGTGGCCGTCTTCCTGGACAACACGCTGGAGGTGAAAAACGCGGCCA
species | Oryza sativa |
transcript | LOC_Os01g55500.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGG TTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTGEST: gi|88203426|gb|CI203275.1|CI203275
genomic: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGGgtttgtccct ... tataatgcagTTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTG
EST: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGG TTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTGEST: gi|25807066|gb|CA763027.1|CA763027
genomic: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGGgtttgtccct ... tataatgcagTTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTG
EST: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGG TTCAACGACTACATCAACACTATCTTCTCATCTCCTCCGACGGTCGGACTGEST: gi|88970709|gb|CI385379.1|CI385379
genomic: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGGgtttgtccct ... tataatgcagTTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTG
EST: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGG TTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTGEST: gi|88222923|gb|CI220669.1|CI220669
genomic: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGGgtttgtccct ... tataatgcagTTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTG
EST: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGG TTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTGEST: gi|15852172|gb|BI804968.1|BI804968
genomic: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGGgtttgtccct ... tataatgcagTTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTG
EST: GGTACAGCAT-GCCGCTCAGCGTGGCCCTGCGCACAC-AAAGCTGGATGG TTCAACGACTACATCAACACTATCTTCTCATCTCCTCCGACGGTCGGACTGEST: gi|88838577|gb|CI375125.1|CI375125
genomic: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGGgtttgtccct ... tataatgcagTTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTG
EST: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGG TTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTGEST: gi|87026155|gb|CI256898.1|CI256898
genomic: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGGgtttgtccct ... tataatgcagTTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTG
EST: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGG TTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTGEST: gi|86873801|gb|CI341234.1|CI341234
genomic: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGGgtttgtccct ... tataatgcagTTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTG
EST: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGG TTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTGEST: gi|58670557|gb|CK059243.1|CK059243
genomic: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGGgtttgtccct ... tataatgcagTTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTG
EST: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGG TTCAACGACTACATCAACACTATCTTCTCATCTCCTCCGACGGTCGGACTGEST: gi|88437904|gb|CI536063.1|CI536063
genomic: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGGgtttgtccct ... tataatgcagTTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTG
EST: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGG TTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTGEST: gi|88460448|gb|CI531921.1|CI531921
genomic: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGGgtttgtccct ... tataatgcagTTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTG
EST: TGCGCACACAAAAGCTGGATGG TTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTGEST: gi|88845862|gb|CI084592.1|CI084592
genomic: TGCGCACACAAAAGCTGGATGGgtttgtccct ... tataatgcagTTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTG
EST: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGG TTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTGEST: gi|88304565|gb|CI518221.1|CI518221
genomic: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGGgtttgtccct ... tataatgcagTTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTG
EST: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGG TTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTGEST: gi|88414210|gb|CI533580.1|CI533580
genomic: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGGgtttgtccct ... tataatgcagTTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTG
EST: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGG TTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTG
genomic: GGTACAGCATGGCCGCTCAGCGTGGCCCTGCGCACACAAAAGCTGGATGGgtttgtccct ... tataatgcagTTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTG
tctgaagcgtagttaggaattacaggtactaacttttgtgtgctgtataatgcagTTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTGATCGTGGCCGTCTTCCTGGACAACACGCTGGAGGTGAAAAACGCGGCCA
tactaac putative branch site (score: 0)
taactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagattatttctacttacaataatactagttgcagtggagattcttctgaagcgtagttaggaattacaggtactaacttttgtgtgctgtataatgcagTTCAACGACTACATCAACACTATCTTCTCATCGCCTCCGACGGTCGGACTGATCGTGGCCGTCTTCCTGGACAACACGCTGGAGGTGAAAAACGCGGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG