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gtatgctatttcttattaagtcctagatgatttccttaactcgcctatgcatttttttgaagtaaaccacgccattgatgccaccaactagattttattgagagtatttgaccttggtttctctatgattgcagCATATGCTAAATACAGAGGTCAGCTGGGCAATGTTAGAAAAGGAGTTCTG
species | Oryza sativa |
transcript | LOC_Os01g54910.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATTCAGCAGCTTTACACGTGGAACTGGGTTTATGCATCGCGCTTTCCAGG CATATGCTAAATACAGAGGTCAGCTGGGCAATGTTAGAAAAGGAGTTCTGEST: gi|58681400|gb|CK070087.1|CK070087
genomic: ATTCAGCAGCTTTACACGTGGAACTGGGTTTATGCATCGCGCTTTCCAGGgtatgctatt ... atgattgcagCATATGCTAAATACAGAGGTCAGCTGGGCAATGTTAGAAAAGGAGTTCTG
EST: ATTCAGCAGCTTTACACGTGGAACTGGGTTTATGCATCGCGCTTTCCAGG CATATGCTAAATACAGAGGTCAGCTGGGCAATGTTAGAAAAGGAGTTCTGEST: gi|218480472|gb|FG958725.1|FG958725
genomic: ATTCAGCAGCTTTACACGTGGAACTGGGTTTATGCATCGCGCTTTCCAGGgtatgctatt ... atgattgcagCATATGCTAAATACAGAGGTCAGCTGGGCAATGTTAGAAAAGGAGTTCTG
EST: ATTCAGCAGCTTTACACGTGGAACTGGGTTTATGCATCGCGCTTTCCAGG CATATGCTAAATACAGAGGTCAGCTGGGCAATGTTAGAAAAGGAGTTCTGEST: gi|58690249|gb|CK078936.1|CK078936
genomic: ATTCAGCAGCTTTACACGTGGAACTGGGTTTATGCATCGCGCTTTCCAGGgtatgctatt ... atgattgcagCATATGCTAAATACAGAGGTCAGCTGGGCAATGTTAGAAAAGGAGTTCTG
EST: ATTCAGCAGCTTTACACGTGGAACTGGGTTTATGCATCGCGCTTTCCAGG CATATGCTAAATACAGAGGTCAGCTGGGCAATGTTAGAAAAGGAGTTCTG
genomic: ATTCAGCAGCTTTACACGTGGAACTGGGTTTATGCATCGCGCTTTCCAGGgtatgctatt ... atgattgcagCATATGCTAAATACAGAGGTCAGCTGGGCAATGTTAGAAAAGGAGTTCTG
gccaccaactagattttattgagagtatttgaccttggtttctctatgattgcagCATATGCTAAATACAGAGGTCAGCTGGGCAATGTTAGAAAAGGAGTTCTG
atttgac putative branch site (score: 30)
tttctctat putative PPT
aactagattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctatttcttattaagtcctagatgatttccttaactcgcctatgcatttttttgaagtaaaccacgccattgatgccaccaactagattttattgagagtatttgaccttggtttctctatgattgcagCATATGCTAAATACAGAGGTCAGCTGGGCAATGTTAGAAAAGGAGTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG