1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...catatgtgttgatacacaactttacattttattttttgcatctcagcatttccatgcactgaaatagttatgactaaaccttttccttccttttctacagACCATAGCACTTGTTGGAGAAAGCGGTAGTGGGAAGTCCACGATAATTGCTTTATTAGAGCGTTTCTATGATCCTGATTCTGGTAATATCTCACTAGATG
species | Oryza sativa |
transcript | LOC_Os01g50100.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTGATGTTCAAATATTCAGTGACTTTACCTTGCACATTCCTTCCCAAAAG ACCATAGCACTTGTTGGAGAAAGCGGTAGTGGGAAATCCACGATAATTGCTEST: gi|29616420|gb|CB621432.1|CB621432
genomic: CTGATGTTCAAATATTCAGTGACTTTACCTTGCACATTCCTTCCCAAAAGgtatacttcc ... ttttctacagACCATAGCACTTGTTGGAGAAAGCGGTAGTGGGAAGTCCACGATAATTGCT
EST: CTGATGTTCAAATATTCAGTGACTTTACCTTGCACATTCCTTCCCAAAAG ACCATAGCACTTGTTGGAGAAAGCGGTAGTGGGAAATCCACGATAATTGCTEST: gi|29616421|gb|CB621433.1|CB621433
genomic: CTGATGTTCAAATATTCAGTGACTTTACCTTGCACATTCCTTCCCAAAAGgtatacttcc ... ttttctacagACCATAGCACTTGTTGGAGAAAGCGGTAGTGGGAAGTCCACGATAATTGCT
EST: CTGATGTTCAAATATTCAGTGACTTTACCTTGCACATTCCTTCCCAAAAG ACCATAGCACTTGTTGGAGAAAGCGGTAGTGGGAAATCCACGATAATTGCTEST: gi|29620636|gb|CB625647.1|CB625647
genomic: CTGATGTTCAAATATTCAGTGACTTTACCTTGCACATTCCTTCCCAAAAGgtatacttcc ... ttttctacagACCATAGCACTTGTTGGAGAAAGCGGTAGTGGGAAGTCCACGATAATTGCT
EST: CTGATGTTCAAATATTCAGTGACTTTACCTTGCACATTCCTTCCCAAAAG ACCATAGCACTTGTTGGAGAAAGCGGTAGTGGGAAATCCACGATAATTGCTEST: gi|29620635|gb|CB625646.1|CB625646
genomic: CTGATGTTCAAATATTCAGTGACTTTACCTTGCACATTCCTTCCCAAAAGgtatacttcc ... ttttctacagACCATAGCACTTGTTGGAGAAAGCGGTAGTGGGAAGTCCACGATAATTGCT
EST: CTGATGTTCAAATATTCAGTGACTTTACCTTGCACATTCCTTCCCAAAAG ACCATAGCACTTGTTGGAGAAAGCGGTAGTGGGAAATCCACGATAATTGCTEST: gi|29616419|gb|CB621431.1|CB621431
genomic: CTGATGTTCAAATATTCAGTGACTTTACCTTGCACATTCCTTCCCAAAAGgtatacttcc ... ttttctacagACCATAGCACTTGTTGGAGAAAGCGGTAGTGGGAAGTCCACGATAATTGCT
EST: ATGTTCAAATATTCAGTGACTTTACCTTGCACATTCCTTCCCAAAAG ACCATAGCACTTGTTGGAGAAAGCGGTAGTGGGAAATCCACGATAATTGCT
genomic: ATGTTCAAATATTCAGTGACTTTACCTTGCACATTCCTTCCCAAAAGgtatacttcc ... ttttctacagACCATAGCACTTGTTGGAGAAAGCGGTAGTGGGAAGTCCACGATAATTGCT
gcatttccatgcactgaaatagttatgactaaaccttttccttccttttctacagACCATAGCACTTGTTGGAGAAAGCGGTAGTGGGAAGTCCACGATAATTGCTTTATTAGAGCGTTTCTATGATCCTGATTCTGGTAATATCTCACTAGATG
gactaaa putative branch site (score: 2)
ctaaaccttttccttc CT-rich tract
aaatagttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatgtgttgatacacaactttacattttattttttgcatctcagcatttccatgcactgaaatagttatgactaaaccttttccttccttttctacagACCATAGCACTTGTTGGAGAAAGCGGTAGTGGGAAGTCCACGATAATTGCTTTATTAGAGCGTTTCTATGATCCTGATTCTGGTAATATCTCACTAGATG
- - tgtgttg
- - - - - - -acacaac
- - - - - - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - tccatgc