Sequence
atgc intronic sequence ATGC exonic sequencegttagcattgagcacttcgtgtttccttgcaagctaaaattttagaattccttaattgcttttattttttatcttttgaattcacatggtcaatttttttcacatgttgaatgatgcagCACTATGACAGAAGAGGCCAGTATGATATTGCTCTAGATAAAATTGATGAGGCTATTTCACACACGCCAACTGTAATTGATTTATACTCAATAAAG
Basic information
species | Oryza sativa |
transcript | LOC_Os01g43030.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g43030.1 (Oryza sativa), 3'ss of exon 13
lower sequence: GRMZM2G321276_T01 (Zea mays), 3'ss of exon 2
gttagcattgagcacttcgtgtttcct-tgcaagctaaaattttagaattccttaattgcttttattttttatcttttgaattcacatggtca-atttttttcacatgttgaatgatgcagCACTATGACAGAAGAGGCCAGTATGATATTGCTCTAGATAAAATTGATGAGGCTATTTCACACACGCCAACTGTAATTGATTTATACTCAATAAAG
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---------------------tttcttgtgccattttatatgtgataaacttctcatttttatatagaaggatatcatgaacttgaataatcatgcttcctcctcactttgtctaatgcagCACTATGACAGAAGAGGGCAATATGACATTGCTTTGAATAAAATCGATGAGGCTATCTCACATACACTGACTGTCATCGATTTATATTCCGTAAAG
upper sequence: LOC_Os01g43030.1 (Oryza sativa), 3'ss of exon 13
lower sequence: GRMZM2G047093_T01 (Zea mays), 3'ss of exon 13
gttagcattgagcacttcgtgtttccttgcaagctaaaattttagaattccttaattgcttttattttttatcttttgaattcacatggtca-atttttttcacatgttgaatgatgcagCACTATGACAGAAGAGGCCAGTATGATATTGCTCTAGATAAAATTGATGAGGCTATTTCACACACGCCAACTGTAATTGATTTATACTCAATAAAG
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gtctgcatt-----tcttgtgccattttacatgttt---tgtgataaacttctcatttttatatagaagaatatcatgaacttgaataatcatgtttcctccccactttgtctaatgcagCACTACGACAGAAGAGGGCAATATGACATTGCTTTGAATAAAATCGATGAGGCTATCTCACATACACCGACTGTCATCGATCTATATTCAGTAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29643975|gb|CB648982.1|CB648982EST: ATACGGAACCTCCATCCACACTCCTGTGGACTCTGTTTTTGATCTCTCAG CACTATGACAGAAGAGGCCAGTATGATATTGCTCTAGATAAAATTGATGAG
genomic: ATACGGAACCTCCATCCACACTCCTGTGGACTCTGTTTTTGATCTCTCAGgttagcattg ... aatgatgcagCACTATGACAGAAGAGGCCAGTATGATATTGCTCTAGATAAAATTGATGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttttatcttttgaattcacatggtcaatttttttcacatgttgaatgatgcagCACTATGACAGAAGAGGCCAGTATGATATTGCTCTAGATAAAATTGATGAGGCTATTTCACACACGCCAACTGTAATTGATTTATACTCAATAAAG
aatttttttcacat TA-rich tract