1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...taatttcattttgtagctatgggcactgttctgatgaaaatgtaaaaaaaagaagaaaaaaagcatatggcagctaaccgtttttttatccgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGCATTTTTGCGTCGGAGGCCGTCTTATACAGTCCGCATGCAGCTGTAGAGC
species | Oryza sativa |
transcript | LOC_Os01g16170.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAG ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGCEST: gi|29641025|gb|CB646032.1|CB646032
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
EST: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAG ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGCEST: gi|29663395|gb|CB659670.1|CB659670
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
EST: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAG ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGCEST: gi|29678252|gb|CB674527.1|CB674527
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
EST: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAG ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGCEST: gi|29664316|gb|CB660591.1|CB660591
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
EST: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAG ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGCEST: gi|29621708|gb|CB626719.1|CB626719
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
EST: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAG ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGCEST: gi|29681320|gb|CB677595.1|CB677595
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
EST: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTTTTCGACATAACAG ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGCEST: gi|29676459|gb|CB672734.1|CB672734
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
EST: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAG ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGCEST: gi|38481874|gb|CF965943.1|CF965943
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
EST: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAG ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGCEST: gi|29677836|gb|CB674111.1|CB674111
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
EST: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAG ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGCEST: gi|29639706|gb|CB644715.1|CB644715
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
EST: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAG ACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
genomic: AGTTTAATGGATAGCAACTGAGAATATTATTACCTTCTTCGACATAACAGgtttgccttg ... cgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGC
aaaaaagaagaaaaaaagcatatggcagctaaccgtttttttatccgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGCATTTTTGCGTCGGAGGCCGTCTTATACAGTCCGCATGCAGCTGTAGAGC
agctaac putative branch site (score: 2)
ccgtttttttatcc CT-rich tract
tttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatttcattttgtagctatgggcactgttctgatgaaaatgtaaaaaaaagaagaaaaaaagcatatggcagctaaccgtttttttatccgtatttcagACCTGAAGGGAGGTGTTTCCTACGTTGAGCTCCATGAATTTGTGAAACGGCATTTTTGCGTCGGAGGCCGTCTTATACAGTCCGCATGCAGCTGTAGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG