1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gagaagccattcacagcgcaaacacttgggtgtcttgtaatgtttactgttggtatttattatgagcaagaagccaagaactgacttgaatgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAAATGGATAAACAAAAAGTGGAAGGAGGGGTTCTATGTCACTGCCTTGGC
species | Oryza sativa |
transcript | LOC_Os01g10150.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAG GAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAEST: gi|89192726|gb|CI050024.1|CI050024
genomic: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGgtatacagtt ... tgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCA
EST: CGGTGGTGATCATGTCAACAG GAACGCCATATGCACAGCTATCCTACAAAGTAAGTGATTCATTTCCCTTCAEST: gi|89184391|gb|CI046956.1|CI046956
genomic: CGGTGGTGATCATGTCAACAGgtatacagtt ... tgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCA
EST: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAG GAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAEST: gi|29670786|gb|CB667061.1|CB667061
genomic: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGgtatacagtt ... tgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCA
EST: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAG GAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAEST: gi|87024232|gb|CI256973.1|CI256973
genomic: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGgtatacagtt ... tgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCA
EST: CTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAG GAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAEST: gi|29645032|gb|CB650039.1|CB650039
genomic: CTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGgtatacagtt ... tgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCA
EST: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAG GAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAEST: gi|29626995|gb|CB632006.1|CB632006
genomic: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGgtatacagtt ... tgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCA
EST: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAG GAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAEST: gi|86483807|gb|CI126440.1|CI126440
genomic: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGgtatacagtt ... tgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCA
EST: CTTTGGCTGGTTCAAATAATGGAAGCTCGNTGGTGATCATGTCAACAG GAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAEST: gi|396941388|gb|HO188597.1|HO188597
genomic: CTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGgtatacagtt ... tgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCA
EST: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAG GAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAEST: gi|89195193|gb|CI051306.1|CI051306
genomic: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGgtatacagtt ... tgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCA
EST: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAG GAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAEST: gi|58611769|gb|CK039481.1|CK039481
genomic: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGgtatacagtt ... tgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCA
EST: TCGTTGGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAG GAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAEST: gi|29632066|gb|CB637075.1|CB637075
genomic: TC-TTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGgtatacagtt ... tgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCA
EST: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAG GAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAEST: gi|88849770|gb|CI001476.1|CI001476
genomic: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGgtatacagtt ... tgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCA
EST: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAG GAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAEST: gi|86483022|gb|CI125655.1|CI125655
genomic: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGgtatacagtt ... tgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCA
EST: TTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAG GAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAEST: gi|29670785|gb|CB667060.1|CB667060
genomic: TTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGgtatacagtt ... tgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCA
EST: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAG GAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAEST: gi|87040610|gb|CI195232.1|CI195232
genomic: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGgtatacagtt ... tgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCA
EST: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAG GAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAEST: gi|3766584|gb|AU030694.1|AU030694
genomic: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGgtatacagtt ... tgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCA
EST: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAG GAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAEST: gi|27546382|gb|CA764550.2|CA764550
genomic: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGgtatacagtt ... tgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCA
EST: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAG GAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAEST: gi|87024182|gb|CI256923.1|CI256923
genomic: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGgtatacagtt ... tgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCA
EST: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAG GAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCA
genomic: TTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGgtatacagtt ... tgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCA
actgttggtatttattatgagcaagaagccaagaactgacttgaatgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAAATGGATAAACAAAAAGTGGAAGGAGGGGTTCTATGTCACTGCCTTGGC
aactgac putative branch site (score: 35)
tgcttctc putative PPT
tatttattatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagaagccattcacagcgcaaacacttgggtgtcttgtaatgtttactgttggtatttattatgagcaagaagccaagaactgacttgaatgcttctcagGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAAATGGATAAACAAAAAGTGGAAGGAGGGGTTCTATGTCACTGCCTTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG