1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtatagaaccaaaaggaatagaatgctgttaatgcaacatttcacctctgcatccaacagttttaacaccatacaatttgtgctattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCTTGGGCACATGAGCATGAACCTGTAACGACACTGTTAGATGCTGTCCAG
species | Oryza sativa |
transcript | LOC_Os01g09320.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAG GGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTEST: gi|218490049|gb|FG963619.1|FG963619
genomic: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAGgtatagaacc ... tattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTT
EST: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAG GGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCTEST: gi|33676232|gb|CF304471.1|CF304471
genomic: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAGgtatagaacc ... tattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCT
EST: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAG GGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCTEST: gi|29642462|gb|CB647469.1|CB647469
genomic: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAGgtatagaacc ... tattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCT
EST: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAG GGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCTEST: gi|218493259|gb|FG949070.1|FG949070
genomic: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAGgtatagaacc ... tattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCT
EST: CTGGATTCAAAG GGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCTEST: gi|33676868|gb|CF305107.1|CF305107
genomic: CTGGATTCAAAGgtatagaacc ... tattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCT
EST: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAG GGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCTEST: gi|58673473|gb|CK062159.1|CK062159
genomic: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAGgtatagaacc ... tattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCT
EST: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAG GGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCTEST: gi|58670000|gb|CK058686.1|CK058686
genomic: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAGgtatagaacc ... tattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCT
EST: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAG GGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCTEST: gi|58672496|gb|CK061182.1|CK061182
genomic: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAGgtatagaacc ... tattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCT
EST: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAG GGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCTEST: gi|58681408|gb|CK070095.1|CK070095
genomic: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAGgtatagaacc ... tattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCT
EST: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAG GGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCTEST: gi|58585822|gb|CF984130.1|CF984130
genomic: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAGgtatagaacc ... tattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCT
EST: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAG GGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCTEST: gi|29626361|gb|CB631372.1|CB631372
genomic: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAGgtatagaacc ... tattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCT
EST: CAATTGAGGAGTGCCGCCAGAAGGTTTGGCTGCTGGATTCAAAG GGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCTEST: gi|58607251|gb|CK035284.1|CK035284
genomic: CAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAGgtatagaacc ... tattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCT
EST: AGGCTCCAATGGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAG GGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCTEST: gi|218502862|gb|FG946696.1|FG946696
genomic: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAGgtatagaacc ... tattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCT
EST: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAG GGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCTEST: gi|218499296|gb|FG965743.1|FG965743
genomic: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAGgtatagaacc ... tattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCT
EST: AGGCTCCAATTGAGGAGTGCCGCAACAAGGTTTGGCTGCTGGATTCAAAG GGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCTEST: gi|58665642|gb|CK054328.1|CK054328
genomic: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAGgtatagaacc ... tattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCT
EST: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAG GGGTTGATCGTTAACTCACGAAAAGAATCCEST: gi|33676662|gb|CF304901.1|CF304901
genomic: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAGgtatagaacc ... tattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCC
EST: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAG GGGTTGATCGTTAACTCACGAAAAGAATCCCTCCANGCATTTAAAAAGCCTEST: gi|8956808|gb|BE230611.1|BE230611
genomic: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAGgtatagaacc ... tattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCT
EST: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAG GGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCTEST: gi|58597534|gb|CK008062.1|CK008062
genomic: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAGgtatagaacc ... tattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCT
EST: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAG GGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTT
genomic: AGGCTCCAATTGAGGAGTGCCGCAAGAAGGTTTGGCTGCTGGATTCAAAGgtatagaacc ... tattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTT
atttcacctctgcatccaacagttttaacaccatacaatttgtgctattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCTTGGGCACATGAGCATGAACCTGTAACGACACTGTTAGATGCTGTCCAG
ttttaac putative branch site (score: 40)
ctatttt putative PPT
atacaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagaaccaaaaggaatagaatgctgttaatgcaacatttcacctctgcatccaacagttttaacaccatacaatttgtgctattttgtagGGGTTGATCGTTAACTCACGAAAAGAATCCCTCCAGGCATTTAAAAAGCCTTGGGCACATGAGCATGAACCTGTAACGACACTGTTAGATGCTGTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG