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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaccttcattcatgaggtccttaggtgcaaatcccagtgaagaataatcagttctactttgtatggttcatctcgcttactgaccggttcatctcgggatcaattacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGATTCAGGTGTATCCGTCGCTGATGGCCTCTCCAATCTGCTGAAG

Basic information

species Oryza sativa
transcript LOC_Os01g08700.8
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g08700.2 (Oryza sativa), 3'ss of exon 14
lower sequence: GRMZM2G107101_T04 (Zea mays), 3'ss of exon 14
---------------------------------------------gtaacaccttcattcatgaggtcc--ttaggtgcaaatcccagtgaagaataatcagttctactttgtatggttcatctcgcttactgaccggttcatctcgggatcaattacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGATTCAGGTGTATCCGTCGCTGATGGCCTCTCCAATCTGCTGAAG-------
                                               ||||   |  |   |   || |  ||  |  |   |  || | || |  |   ||||    |||  |||   |   |    | ||||| |     | || ||      |||  ||||||  ||||||| |||||  | || |||||||| ||| |||||||||||||||||||| |||| || || ||||| || || ||||||||||||       
gtgacatttcttccattcgtcagatttcgtaacaggagaattcttccaacaaaattctctgttctgttccattgtgctctgctgtcattaaacacgatcaagttaccatttccatg-cactctttatctgctgactgtcgtttgtctgg--tggatacatgcagCTTCTGGAAGTGACCGCTCGGGCTGTCCATCTTATCATCGAATGGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGGCATGCC

upper sequence: LOC_Os01g08700.2 (Oryza sativa), 3'ss of exon 14
lower sequence: GRMZM5G844173_T01 (Zea mays), 3'ss of exon 13
----------------------------------------------gtaacaccttcattcatgaggtcc--ttaggtgcaaatcccagtgaagaataatcagttctact--------------------ttgtatggt---tcatctc---gcttactgaccggttcatctcgggatcaattacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGATTCAGGTGTATCCGTCGCTGATGGCCTCTCCAATCTGCTGAAG
                                               |||||   || |   |   || |  ||| || |   |  || | || | || |||| | ||                      | | ||| |   ||||||     ||| |||||       | || ||      |    ||||||  | |||||||||||  ||||||||||||| ||  | |||||||||||| ||||| |||| || ||||||||||| || |||||||| |||
gtgacatttctttcgttcatcagatctcgtgacaggaggataccttttaacaaaatcgtctgttctgttccattatgttctgttgtcattaaaca-tagtcagctttatcatttcccgcgcactacaaactcgcatgatatatcatcttttgacttgctgactatcgtttatctgg--tggatgtatgcagCTTCTCGAAGTAACCGCTCGAGCAGTCCATCTTATTATTGAATGGGGAGATCCAGGTTTATCAGTTGCTGATGGCCTTTCTAATCTGCTAAAG

upper sequence: LOC_Os01g08700.2 (Oryza sativa), 3'ss of exon 14
lower sequence: GRMZM2G107101_T01 (Zea mays), 3'ss of exon 13
---------------------------------------------gtaacaccttcattcatgaggtcc--ttaggtgcaaatcccagtgaagaataatcagttctactttgtatggttcatctcgcttactgaccggttcatctcgggatcaattacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGATTCAGGTGTATCCGTCGCTGATGGCCTCTCCAATCTGCTGAAG
                                               ||||   |  |   |   || |  ||  |  |   |  || | || |  |   ||||    |||  |||   |   |    | ||||| |     | || ||      |||  ||||||  ||||||| |||||  | || |||||||| ||| |||||||||||||||||||| |||| || || ||||| || || ||||||||||||
gtgacatttcttccattcgtcagatttcgtaacaggagaattcttccaacaaaattctctgttctgttccattgtgctctgctgtcattaaacacgatcaagttaccatttccatg-cactctttatctgctgactgtcgtttgtctgg--tggatacatgcagCTTCTGGAAGTGACCGCTCGGGCTGTCCATCTTATCATCGAATGGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29683782|gb|CB680057.1|CB680057
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29678222|gb|CB674497.1|CB674497
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|86479924|gb|CI122557.1|CI122557
EST:     ATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: ATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|88727803|gb|CI749605.1|CI749605
EST:     TTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: TTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|218500614|gb|FG963936.1|FG963936
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|86599150|gb|CI355767.1|CI355767
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         G
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcag-
EST: gi|86599150|gb|CI355767.1|CI355767
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         G
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcag-
EST: gi|29661464|gb|CB657739.1|CB657739
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29640970|gb|CB645977.1|CB645977
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|38473887|gb|CF958019.1|CF958019
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|87014839|gb|CI271438.1|CI271438
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|8956369|gb|BE230188.1|BE230188
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29666879|gb|CB663154.1|CB663154
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|58694532|gb|CK083219.1|CK083219
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|87013961|gb|CI271352.1|CI271352
EST:     ACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: ACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29659878|gb|CB656153.1|CB656153
EST:     TTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: TTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|38475264|gb|CF959397.1|CF959397
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29662457|gb|CB658732.1|CB658732
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29640400|gb|CB645409.1|CB645409
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|86437083|gb|CI118805.1|CI118805
EST:     TTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: TTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|569793|gb|D40642.1|D40642
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|38475517|gb|CF959650.1|CF959650
EST:     CTGATGG-AGGGTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29655772|gb|CB652047.1|CB652047
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29657251|gb|CB653526.1|CB653526
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|86478281|gb|CI120914.1|CI120914
EST:     TGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: TGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|33381935|gb|CF197278.1|CF197278
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|33675543|gb|CF303782.1|CF303782
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29665790|gb|CB662065.1|CB662065
EST:     TGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACCAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGA
genomic: TGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCA-CAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGA
EST: gi|33796653|gb|CF324194.1|CF324194
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|86481276|gb|CI123909.1|CI123909
EST:     GATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: GATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29656546|gb|CB652821.1|CB652821
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|33796911|gb|CF324319.1|CF324319
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29658234|gb|CB654509.1|CB654509
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29656547|gb|CB652822.1|CB652822
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|33381859|gb|CF197202.1|CF197202
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|38472171|gb|CF956302.1|CF956302
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29661493|gb|CB657768.1|CB657768
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29672499|gb|CB668774.1|CB668774
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29645728|gb|CB650735.1|CB650735
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29623545|gb|CB628556.1|CB628556
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29657666|gb|CB653941.1|CB653941
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|87041499|gb|CI196121.1|CI196121
EST:     TTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: TTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|88724061|gb|CI749071.1|CI749071
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|396941595|gb|HO188252.1|HO188252
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29677022|gb|CB673297.1|CB673297
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29640969|gb|CB645976.1|CB645976
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29660971|gb|CB657246.1|CB657246
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29636462|gb|CB641471.1|CB641471
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|58688124|gb|CK076811.1|CK076811
EST:     TGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTANTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: TGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|29639165|gb|CB644174.1|CB644174
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTGCCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTTATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
EST: gi|8335255|gb|BE040239.1|BE040239
EST:     CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAG                         CTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT
genomic: CTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 33

AGAAGCATTGGTGATCCTTGCTAGTGCTTCAGATCTTCTTCTTCGAGCAACTGATGGAATGCTTGTTGATGGTGAAGCTTGTACTTTACCACAATTAGAGgtaacacctt ... ttacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGATTCAGGTGTATCCGTCGCTGATGGCCTCTCCAATCTGCTGAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtatggttcatctcgcttactgaccggttcatctcgggatcaattacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGATTCAGGTGTATCCGTCGCTGATGGCCTCTCCAATCTGCTGAAG
                   tactgac  putative branch site (score: 33)
                                        atcaatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaacaccttcattcatgaggtccttaggtgcaaatcccagtgaagaataatcagttctactttgtatggttcatctcgcttactgaccggttcatctcgggatcaattacgagcagCTATTGGAAGTAACCGCCAGAGCAGTCCATCTCATCGTCGAATGGGGAGATTCAGGTGTATCCGTCGCTGATGGCCTCTCCAATCTGCTGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG